PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0185s0330.7.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 289aa    MW: 32540.8 Da    PI: 8.2864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0185s0330.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19e-20182275198
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+ +l ps+v +  +l +p +fa+++ + + ++   +tl+  +g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++
  SapurV1A.0185s0330.7.p 182 FQVILRPSYVYRGFLLHIPSSFARTFlNRV-TG--FVTLQVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIH 263
                             88999******************9995444.34..49999999********..66666677*************************9 PP

                             SSEE..EEEEE- CS
                      B3  87 rsefelvvkvfr 98 
                              ++  ++v +fr
  SapurV1A.0185s0330.7.p 264 AKDIVMKVAIFR 275
                             999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-26174275IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-26175275IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-25180275No hitNo description
PfamPF023622.4E-18182275IPR003340B3 DNA binding domain
PROSITE profilePS5086314.917182277IPR003340B3 DNA binding domain
SMARTSM010195.7E-18182277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MYDLTVSEIK NPCNSISQLQ ESSHDNPCLL PHEKDDGLKK ILGFRPPSPN LLSSTTSKNF  60
NEYVHCNWPQ STYTASLEKP HVRTDAYNLR ENCQSSRDIG TQFNGGELTS TEDGVGSIIS  120
GITAKTSGSK RMSENSIQNV KQKLSVKNTS ETHTRRQRAV TPEEKERTIR AAHMFRPANP  180
FFQVILRPSY VYRGFLLHIP SSFARTFLNR VTGFVTLQVC DGKQWPVRCS FKDGKAKLGQ  240
GWTEFVWENN LEEGDVCIFE LIHAKDIVMK VAIFRVLEDA VPPDQLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-4915127818144B3 domain-containing transcription factor VRN1
4i1k_B4e-4915127818144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0185s0330.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A3N7ETM40.0A0A3N7ETM4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-50related to vernalization1 1