PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0185s0330.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 383aa MW: 43133 Da PI: 8.5389 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 25 | 109 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ++ l+ + l +pkkf++++g + s tl+ + g + v+l +k g+ ++ kGW eFv+ +++g f+vF ++g+s+f SapurV1A.0185s0330.5.p 25 MVASILQDKKLKIPKKFVNKYGDE--LSSIATLTVPCGGIFLVEL--QKDNGKLWFHKGWHEFVECYSIRVGYFLVFLYEGKSNF-- 105 4455566677***********865..7779***************..999999***************************99999.. PP EEEE CS B3 93 vvkv 96 +v++ SapurV1A.0185s0330.5.p 106 NVHM 109 6665 PP | |||||||
2 | B3 | 51 | 2.7e-16 | 292 | 369 | 17 | 98 |
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p +fa+++ + + ++ +tl+ +g++W v++ + k+g+ l++GW eFv +n+L+egD+++F+l++ ++ ++v +fr SapurV1A.0185s0330.5.p 292 HIPSSFARTFlNRV-TG--FVTLQVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIHAKDIVMKVAIFR 369 599****9995444.34..49999999********..66666677*************************9999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-21 | 16 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-21 | 17 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.209 | 20 | 113 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.27E-16 | 20 | 111 | No hit | No description |
SMART | SM01019 | 6.1E-11 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-10 | 24 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-9 | 279 | 371 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-20 | 289 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-20 | 289 | 369 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.2E-15 | 292 | 369 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.69E-18 | 293 | 369 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 293 | 371 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MSQSAGKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SIATLTVPCG 60 GIFLVELQKD NGKLWFHKGW HEFVECYSIR VGYFLVFLYE GKSNFNVHMY DLTVSEIKNP 120 CNSISQLQES SHDNPCLLPH EKDDGLKKIL GFRPPSPNLL SSTTSKNFNE YVHCNWPQST 180 YTASLEKPHV RTDAYNLREN CQSSRDIGTQ FNGGELTSTE DGVGSIISGI TAKTSGSKRM 240 SENSIQNVKQ KLSVKNTSET HTRRQRAVTP EEKERTIRAA HMFRPANPFF QHIPSSFART 300 FLNRVTGFVT LQVCDGKQWP VRCSFKDGKA KLGQGWTEFV WENNLEEGDV CIFELIHAKD 360 IVMKVAIFRV LEDAVPPDQL SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-36 | 259 | 372 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-36 | 259 | 372 | 18 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0185s0330.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454808.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | A0A2K2AUS2 | 0.0 | A0A2K2AUS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15410.1 | 1e-162 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 4e-70 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0185s0330.5.p |