PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0185s0330.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 397aa    MW: 44811.1 Da    PI: 8.7928
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0185s0330.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-1325109696
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                             + ++ l+ + l +pkkf++++g +   s   tl+ + g  + v+l  +k  g+ ++ kGW eFv+   +++g f+vF ++g+s+f  
  SapurV1A.0185s0330.2.p  25 MVASILQDKKLKIPKKFVNKYGDE--LSSIATLTVPCGGIFLVEL--QKDNGKLWFHKGWHEFVECYSIRVGYFLVFLYEGKSNF-- 105
                             4455566677***********865..7779***************..999999***************************99999.. PP

                             EEEE CS
                      B3  93 vvkv 96 
                             +v++
  SapurV1A.0185s0330.2.p 106 NVHM 109
                             6665 PP
2B361.31.6e-19290383198
                             EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             f+ +l ps+v +  +l +p +fa+++ + + ++   +tl+  +g++W v++  + k+g+  l++GW eFv +n+L+egD+++F+l++
  SapurV1A.0185s0330.2.p 290 FQVILRPSYVYRGFLLHIPSSFARTFlNRV-TG--FVTLQVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIH 371
                             88999******************9995444.34..49999999********..66666677*************************9 PP

                             SSEE..EEEEE- CS
                      B3  87 rsefelvvkvfr 98 
                              ++  ++v +fr
  SapurV1A.0185s0330.2.p 372 AKDIVMKVAIFR 383
                             999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2116111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-2117111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.81E-1620111No hitNo description
PROSITE profilePS5086311.20920113IPR003340B3 DNA binding domain
SMARTSM010196.1E-1121113IPR003340B3 DNA binding domain
PfamPF023623.1E-1024110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-26282383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-25283383IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-24288383No hitNo description
SMARTSM010195.7E-18290385IPR003340B3 DNA binding domain
PROSITE profilePS5086314.917290385IPR003340B3 DNA binding domain
PfamPF023624.4E-18290383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MSQSAGKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SIATLTVPCG  60
GIFLVELQKD NGKLWFHKGW HEFVECYSIR VGYFLVFLYE GKSNFNVHMY DLTVSEIKNP  120
CNSISQLQES SHDNPCLLPH EKDDGLKKIL GFRPPSPNLL SSTTSKNFNE YVHCNWPQST  180
YTASLEKPHV RTDAYNLREN CQSSRDIGTQ FNGGELTSTE DGVGSIISGI TAKTSGSKRM  240
SENSIQNVKQ KLSVKNTSET HTRRQRAVTP EEKERTIRAA HMFRPANPFF QVILRPSYVY  300
RGFLLHIPSS FARTFLNRVT GFVTLQVCDG KQWPVRCSFK DGKAKLGQGW TEFVWENNLE  360
EGDVCIFELI HAKDIVMKVA IFRVLEDAVP PDQLSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-4825938618144B3 domain-containing transcription factor VRN1
4i1k_B9e-4825938618144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0185s0330.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.10.0B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A2K2AUS20.0A0A2K2AUS2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.11e-178(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-82B3 family protein