PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0185s0330.16.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 243aa    MW: 27052.7 Da    PI: 8.2034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0185s0330.16.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.5e-1425110697
                              ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                       B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                              + ++ l+ + l +pkkf++++g +   s   tl+ + g  + v+l  +k  g+ ++ kGW eFv+   +++g f+vF ++g+s+f 
  SapurV1A.0185s0330.16.p  25 MVASILQDKKLKIPKKFVNKYGDE--LSSIATLTVPCGGIFLVEL--QKDNGKLWFHKGWHEFVECYSIRVGYFLVFLYEGKSNF- 105
                              4455566677***********865..7779***************..999999***************************99999. PP

                              .EEEEE CS
                       B3  92 lvvkvf 97 
                               +v+++
  SapurV1A.0185s0330.16.p 106 -NVHMY 110
                              .66654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-2116112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2117111IPR015300DNA-binding pseudobarrel domain
CDDcd100179.49E-1820111No hitNo description
PROSITE profilePS5086311.20920113IPR003340B3 DNA binding domain
SMARTSM010196.1E-1121113IPR003340B3 DNA binding domain
PfamPF023621.2E-1024110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSQSAGKPDG SDSPARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SIATLTVPCG  60
GIFLVELQKD NGKLWFHKGW HEFVECYSIR VGYFLVFLYE GKSNFNVHMY DLTVSEIKNP  120
CNSISQLQES SHDNPCLLPH EKDDGLKKIL GFRPPSPNLL SSTTSKNFNE YVHCNWPQST  180
YTASLEKPHV RTDAYNLREN CQSSRDIGTQ FNGGELTSTE DGVGSIISGI TAKTSGSKRM  240
NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0185s0330.16.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454808.11e-158B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLA0A2K2AUS21e-157A0A2K2AUS2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15410.13e-97(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-32B3 family protein