PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0185s0100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

ZF-HD

Protein Properties

Length: 267aa MW: 29231.6 Da PI: 8.8333

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0185s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99	3.6e-31	57	114	2	60
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 + vrYkeClkNhAa++Gg+a+DGCgEf+p geeg+ +alkC+AC+CHRnFHR+e++ e SapurV1A.0185s0100.1.p 57 KVVRYKECLKNHAAAIGGNATDGCGEFIPG-GEEGSLEALKCSACNCHRNFHRKEMDGE 114 679************************9.999*******************9865 PP
2	Homeobox	19.4	1.8e-06	201	256	1	52
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ +++ + L ++lg++ r+ kvW +N + SapurV1A.0185s0100.1.p 201 KRFRTKFTEEQKQKMLNFAEkagwKMQKLEESAVQGLCQELGIKRRVLKVWMHNNK 256 789**********8866677778***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.5E-28	59	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-23	59	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-29	60	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.979	61	110	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.2E-28	195	261	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.649	198	262	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-19	198	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.2E-26	200	256	IPR006455	Homeodomain, ZF-HD class
CDD	cd00086	0.00158	201	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MNESSLQKDM PISRNGSYEG GNGHSHTVTS AAAAAAQVPT NGHSPSSQQE DERPYKKVVR 60 YKECLKNHAA AIGGNATDGC GEFIPGGEEG SLEALKCSAC NCHRNFHRKE MDGECSYDFH 120 RHYPNIGSGR LILGHHNGFI GSPPQGYPAS SFISSRAPPP HQVVVSYKNG GANAITSESD 180 EKEEDNGGGL LTTRPVEKLK KRFRTKFTEE QKQKMLNFAE KAGWKMQKLE ESAVQGLCQE 240 LGIKRRVLKV WMHNNKHNYV KSSTSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-20	201	258	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0185s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC185361	0.0	AC185361.2 Populus trichocarpa clone Pop1-55D12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005585.1	0.0	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	8e-67	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	B9H431	0.0	B9H431_POPTR; Uncharacterized protein
STRING	POPTR_0004s14270.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	7e-69	homeobox protein 21

Link Out ? help Back to Top
Phytozome	SapurV1A.0185s0100.1.p

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]