PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0184s0410.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 347aa    MW: 37778.8 Da    PI: 4.9311
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0184s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-08436436
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                            + C+ +++  ++lfC+ ++ +lC +C +++H+ 
  SapurV1A.0184s0410.1.p  4 KLCDSCKSATATLFCRADSAFLCISCDSNIHEA 36
                            58*****************************65 PP
2zf-B_box27.56.6e-094691342
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             ++C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  SapurV1A.0184s0410.1.p 46 VWVCEVCEQAPAHVTCKADAASLCVTCDRDIHSAnplaqrHERVPV 91
                            589*****************************66899999999986 PP
3CCT70.44.6e-24283326144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SapurV1A.0184s0410.1.p 283 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 326
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-12148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.523148IPR000315B-box-type zinc finger
PfamPF006438.2E-6442IPR000315B-box-type zinc finger
CDDcd000211.97E-8548No hitNo description
PROSITE profilePS5011910.5664491IPR000315B-box-type zinc finger
PfamPF006434.0E-74691IPR000315B-box-type zinc finger
CDDcd000216.92E-94791No hitNo description
SMARTSM003363.5E-104991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787283325IPR010402CCT domain
PfamPF062035.2E-18283325IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCISCD SNIHEANKLA SRHLRVWVCE VCEQAPAHVT  60
CKADAASLCV TCDRDIHSAN PLAQRHERVP VTPYFGSSSA VHGCGDAVNF LEYSSFDDVD  120
GGDDVSREEA EAESWLLPNP GGGDTKEVES VDLNTGQYVF GVEMHPYLDM DRYVDPKVEV  180
QEQNSSGTTD GVVPVQSNKL GFQAPALVDD NCCFDLDFST GSKTFSGGYG YDSLSHSVSS  240
SSLDVGVVPD ESALTDISNP YSRSVSNGME SANQTVQLSA VDREARVLRY REKRKNRKFE  300
KTIRYASRKA YAETRPRIKG RFAKRTDSGV EVDRSSIYGF GVVPSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0184s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031404.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-127COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLB9HB920.0B9HB92_POPTR; Co-like family protein
STRINGPOPTR_0006s28350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-122CONSTANS-like 4