PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0184s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 26862.1 Da PI: 9.868 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.6 | 1.5e-29 | 89 | 147 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv++sae+p++++ tYegeHnh SapurV1A.0184s0040.2.p 89 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQKSAENPSILVATYEGEHNHA 147 7***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.5E-28 | 79 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.719 | 83 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 84 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-33 | 88 | 148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-24 | 90 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLGLLSENYM ALQKHLVNLT SENSEKELIT TPVISRKRKA ESEDAINGGN TESISSDEDS 60 SKRPQENSKT KISRAYFRTN ASDTSLVVRD GYQWRKYGQK VTRDNPSPRA YFKCSFAPSC 120 PVKKKVQKSA ENPSILVATY EGEHNHASQS QPELSLGSSQ SSSFGLVPSP PSTRRSVPTV 180 TLDLIQSGVQ VDSAGKTVQE KLQGPELQKV LVQQMASSLS RDPNFAAVLA AAISGRFNQT 240 RIEKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-20 | 87 | 146 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-20 | 87 | 146 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0184s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377429 | 0.0 | GQ377429.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031461.1 | 1e-140 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-71 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1L6K4I1 | 1e-139 | A0A1L6K4I1_POPTO; Putative WRKY transcription factor family protein | ||||
TrEMBL | C9DHZ8 | 1e-139 | C9DHZ8_9ROSI; WRKY transcription factor 9 | ||||
STRING | POPTR_0006s27950.1 | 1e-138 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-64 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0184s0040.2.p |