PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0184s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 34587.7 Da PI: 9.4956 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93 | 2.2e-29 | 157 | 215 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv++sae+p++++ tYegeHnh SapurV1A.0184s0040.1.p 157 RDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQKSAENPSILVATYEGEHNHA 215 7***************************99****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-28 | 147 | 215 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.719 | 151 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 152 | 215 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-33 | 156 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.0E-24 | 158 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDSSWVNTSL NLNINPFNHV NETQARNIKF EGDSTRLEQK VKVEKEAGVG VLVEELNRVS 60 SENKRLTEML GLLSENYMAL QKHLVNLTSE NSEKELITTP VISRKRKAES EDAINGGNTE 120 SISSDEDSSK RPQENSKTKI SRAYFRTNAS DTSLVVRDGY QWRKYGQKVT RDNPSPRAYF 180 KCSFAPSCPV KKKVQKSAEN PSILVATYEG EHNHASQSQP ELSLGSSQSS SFGLVPSPPS 240 TRRSVPTVTL DLIQSGVQVD SAGKTVQEKL QGPELQKVLV QQMASSLSRD PNFAAVLAAA 300 ISGRFNQTRI EKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 155 | 214 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0184s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377429 | 0.0 | GQ377429.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 9 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031461.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-83 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1L6K4I1 | 0.0 | A0A1L6K4I1_POPTO; Putative WRKY transcription factor family protein | ||||
TrEMBL | C9DHZ8 | 0.0 | C9DHZ8_9ROSI; WRKY transcription factor 9 | ||||
STRING | POPTR_0006s27950.1 | 1e-178 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-71 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0184s0040.1.p |