PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0183s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 314aa    MW: 33645.6 Da    PI: 4.651
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0183s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.42.8e-081863238
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.........Ht 38
                            e+++C+ ++   +  fC+ ++ +lC +C +++H+g         H+
  SapurV1A.0183s0070.1.p 18 EAKRCDSCKTAAAAAFCKADSAFLCLNCDTKIHHGqvnrkimsrHE 63
                            5789******99********************97766666666665 PP
2zf-B_box27.18.7e-0965110342
                zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                              ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  SapurV1A.0183s0070.1.p  65 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 110
                             689*****************************66899999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0021754IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8081767IPR000315B-box-type zinc finger
PfamPF006433.4E-61863IPR000315B-box-type zinc finger
CDDcd000211.89E-52167No hitNo description
PROSITE profilePS5011910.8563110IPR000315B-box-type zinc finger
SMARTSM003369.9E-1663110IPR000315B-box-type zinc finger
PfamPF006437.5E-765110IPR000315B-box-type zinc finger
CDDcd000211.61E-866110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGIVVESLKN LTGGWGVEAK RCDSCKTAAA AAFCKADSAF LCLNCDTKIH HGQVNRKIMS  60
RHERVWMCEV CEQAPAAVTC KADAAALCVT CDADIHSANP LARRHERVPV EPFYDSAESV  120
VKTSPAFNFI VPGENGVSGY DQNEDVEGVS WLLQSNHTTN DLNSKLQIEN PVVKTGDVFF  180
SEMDPFLDFE YQNSMDASYE QIHGGAGAGA DSVVPVQTKP APLPVINHES CFDIDFCRSK  240
LTSFCYSSQS LSQSVSSSSL DVGVVPDGNS MSDISHPFGR SMSTTTDPSM PISGCTANQA  300
ATQLAGIDRE ARV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0183s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018162.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH89e-90COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLU5FG520.0U5FG52_POPTR; Uncharacterized protein
STRINGPOPTR_0018s10510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-78CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]