PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0182s0110.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 497aa    MW: 55055.4 Da    PI: 5.2083
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0182s0110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.9e-34141052102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d+ +++++sws+++nsfvv++  ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F +
  SapurV1A.0182s0110.2.p  14 FLSKTYDMVDDPLTDSVVSWSSSNNSFVVWNVPEFQTDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------FEFANEGFLR 91 
                             9*****************************************************************99.........67******** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll++i rkk 
  SapurV1A.0182s0110.2.p  92 GQKQLLRSIYRKKP 105
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-37597IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5710103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3210103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2914103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDSVNNNTNA VPPFLSKTYD MVDDPLTDSV VSWSSSNNSF VVWNVPEFQT DLLPKYFKHS  60
NFSSFVRQLN TYGFRKVDPD RFEFANEGFL RGQKQLLRSI YRKKPVHGNH PPQVQSSSVT  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDH QLHTVGQRVQ GMEQRQQQMM  180
SFLAKAMQSP GFLSQLVQQQ NESNRRIAGA SKKRRLPRQE EDNMAGVQCK TSPNGQIIKF  240
HSSMNEAAKA MLHQILKMNS SPRLEPSMNN SGPLLIGNHP SSNELDSGSS STRMSGVMLS  300
EFPTASGPSY LPIETGFSAS HSATSISEVQ APACVATDYI KTDYPAEMGM HNSGQNTALP  360
NFTPMIGIVP GGSAGGPNMN IAGSEKSNGE FFDTMSSVLD ASVPLETEAF SPSQDEEVFL  420
DGNPKLPGIN DVFWEQFLTA SPFNGETDEI NSSSPESSMS KENELQSWQD NEWDNIQHMN  480
HLAEQMELLT PKSLKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-261110326129Heat shock factor protein 1
5d5v_B6e-261110326129Heat shock factor protein 1
5d5v_D6e-261110326129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0182s0110.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139770.0KP013977.1 Populus simonii heat shock transcription factor A1d (HsfA1d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319787.30.0heat stress transcription factor A-1e isoform X1
RefseqXP_024439744.10.0heat stress transcription factor A-1e isoform X1
SwissprotQ84T611e-157HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2K1Y2T10.0A0A2K1Y2T1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s07730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-127heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]