PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0182s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 497aa MW: 55055.4 Da PI: 5.2083 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.3 | 5.9e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d+ +++++sws+++nsfvv++ ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ eF+++ F + SapurV1A.0182s0110.1.p 14 FLSKTYDMVDDPLTDSVVSWSSSNNSFVVWNVPEFQTDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------FEFANEGFLR 91 9*****************************************************************99.........67******** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k+ll++i rkk SapurV1A.0182s0110.1.p 92 GQKQLLRSIYRKKP 105 ***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-37 | 5 | 97 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.9E-57 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-32 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.9E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.6E-29 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDSVNNNTNA VPPFLSKTYD MVDDPLTDSV VSWSSSNNSF VVWNVPEFQT DLLPKYFKHS 60 NFSSFVRQLN TYGFRKVDPD RFEFANEGFL RGQKQLLRSI YRKKPVHGNH PPQVQSSSVT 120 ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQATDH QLHTVGQRVQ GMEQRQQQMM 180 SFLAKAMQSP GFLSQLVQQQ NESNRRIAGA SKKRRLPRQE EDNMAGVQCK TSPNGQIIKF 240 HSSMNEAAKA MLHQILKMNS SPRLEPSMNN SGPLLIGNHP SSNELDSGSS STRMSGVMLS 300 EFPTASGPSY LPIETGFSAS HSATSISEVQ APACVATDYI KTDYPAEMGM HNSGQNTALP 360 NFTPMIGIVP GGSAGGPNMN IAGSEKSNGE FFDTMSSVLD ASVPLETEAF SPSQDEEVFL 420 DGNPKLPGIN DVFWEQFLTA SPFNGETDEI NSSSPESSMS KENELQSWQD NEWDNIQHMN 480 HLAEQMELLT PKSLKG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-26 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-26 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-26 | 11 | 103 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0182s0110.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP013977 | 0.0 | KP013977.1 Populus simonii heat shock transcription factor A1d (HsfA1d) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319787.3 | 0.0 | heat stress transcription factor A-1e isoform X1 | ||||
Refseq | XP_024439744.1 | 0.0 | heat stress transcription factor A-1e isoform X1 | ||||
Swissprot | Q84T61 | 1e-157 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | A0A2K1Y2T1 | 0.0 | A0A2K1Y2T1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s07730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-127 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0182s0110.1.p |
Publications ? help Back to Top | |||
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