PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0182s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bZIP
Protein Properties Length: 335aa    MW: 37275.6 Da    PI: 5.4346
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0182s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.44.8e-11135193563
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                             kr++r + NR +A rs +RK  ++ eLe+kv +L++e ++L  +l   +   ++l++e+
  SapurV1A.0182s0020.1.p 135 KRAKRIMANRQSAARSKERKARYVLELERKVHTLQTESTSLSAQLTLFQRDTSSLTTEN 193
                             9*********************************************9999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-15131195IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806133196IPR004827Basic-leucine zipper domain
PfamPF001703.2E-9135193IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-10135189No hitNo description
Gene3DG3DSA:1.20.5.1705.3E-10135190No hitNo description
CDDcd147031.03E-21136185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MQDSSNSDAS EFPFRGSCHR RAHSDVPFRV TDDLDLFPDD LVSEEDIFCS YMDMEKLGSR  60
PEEGPSGMKQ DNAGHESASG GGGVQDVEEE QERAYLKPRH KYSNSVDGSS LMESIDSKKA  120
MAPEKLAELW ALDPKRAKRI MANRQSAARS KERKARYVLE LERKVHTLQT ESTSLSAQLT  180
LFQRDTSSLT TENSELKLQL QAMEQQAQLR DALNEALKKE VERLKFATGE IMTPTDSYNL  240
GMQHIPFNHS LLVSPRPRPG SADALNIQIP QFHPLQSNLS PCQPAIASLH SHALSEMLPQ  300
DTLRWAQGFD ISSRSSVLVR SECHSISASE DCSL*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0182s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103821e-159AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439088.10.0bZIP transcription factor 18 isoform X1
SwissprotO228731e-99BZP18_ARATH; bZIP transcription factor 18
TrEMBLB9I8D70.0B9I8D7_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-89bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]