PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0180s0110.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 318aa MW: 35368.5 Da PI: 6.436 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.9 | 1e-33 | 158 | 215 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers dp+vv++tYeg+H h+ SapurV1A.0180s0110.2.p 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFGDPSVVVTTYEGQHSHP 215 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 4.0E-105 | 1 | 317 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.5E-34 | 142 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-29 | 149 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.72 | 152 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 157 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-26 | 158 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDRREAVKVE NFDGSPTFCA TNDHVQTSFP FMQGHGFDFV DGDKSALGFM ELLGMQDFSP 60 SLLDVIQVPV PPAQAPNVQV VMESPSELLN QPATPNSSSI SSVSSEGLND EPVNKSADDE 120 VEEHEKNKKE LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY 180 YRCTTASCNV KKRVERSFGD PSVVVTTYEG QHSHPSPVMP RPNFTGLASD PGFSSTAAFV 240 MPMQRRLSFY QQHQSHPPPP FGNSFSPLGF GCNESTANAA VNYLQFEKHF CSSSGSNLLK 300 DHGLLQDLVP SHMLNEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-28 | 147 | 218 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 9e-28 | 147 | 218 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0180s0110.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040950.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 2e-65 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1L6K5G1 | 0.0 | A0A1L6K5G1_POPTO; WRKY transcription factor | ||||
STRING | POPTR_0002s19390.1 | 1e-163 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 1e-59 | WRKY DNA-binding protein 23 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0180s0110.2.p |
Publications ? help Back to Top | |||
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