PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0180s0110.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WRKY

Protein Properties

Length: 318aa MW: 35343.4 Da PI: 6.3486

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0180s0110.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.9	1e-33	158	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers dp+vv++tYeg+H h+ SapurV1A.0180s0110.1.p 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFGDPSVVVTTYEGQHSHP 215 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	2.4E-104	1	317	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	3.5E-34	142	217	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-29	149	217	IPR003657	WRKY domain
PROSITE profile	PS50811	31.72	152	217	IPR003657	WRKY domain
SMART	SM00774	1.1E-39	157	216	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDRREAVKVE NFDGSPTFCA TNDHVQTSFP FMQGHGFDFV DGDKSALGFM ELLGMQDFSP 60 SLLDVIQVPV PPAQAPNVQV VMESPSELLN QPATPNSSSI SSVSSEGLND EPVNKSADDE 120 VEEHEKNKKE LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY 180 YRCTTASCNV KKRVERSFGD PSVVVTTYEG QHSHPSPVMP RPNFTGLASD PGFSSTAAFV 240 MPMQRRLSFY QQHQSQPPPP FGNSFSPLGF GCNESTANAA VNYLQFEKHF CSSSGSNLLK 300 DHGLLQDLVP SHMPNEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-28	147	218	7	78	Probable WRKY transcription factor 4
2lex_A	9e-28	147	218	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0180s0110.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040950.1	0.0	PREDICTED: probable WRKY transcription factor 23
Swissprot	O22900	1e-64	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1L6K5G1	0.0	A0A1L6K5G1_POPTO; WRKY transcription factor
STRING	POPTR_0002s19390.1	1e-161	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-58	WRKY DNA-binding protein 23

Link Out ? help Back to Top
Phytozome	SapurV1A.0180s0110.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]