PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0179s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 516aa MW: 57131.1 Da PI: 6.1055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0179s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.6e-07	283	304	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H SapurV1A.0179s0170.1.p 283 FCTICGKGFKRDANLRMHMRGH 304 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-5	280	307	No hit	No description
PROSITE profile	PS50157	12.03	282	309	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	282	304	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.0E-6	283	333	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	284	304	IPR007087	Zinc finger, C2H2
SMART	SM00355	56	331	364	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	24	369	391	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MEPNDRLSLD AWANPSSSCN GLPRKMSLEN PSFTNFNLQQ QEQKWDDTSI LNYGIRIEPP 60 FLEFNQASES EYLLSSTCNN QPKVLDQEDG LNSEALQTSK SLDWDPRTML NNLSFLEQKI 120 HHLQDLVHLI VGRKGQALGG HDQLVTQQQQ LITADLTSII VQLISTAGSL LPSVKHKLST 180 GPPNGQLGEL LFPPLAGMNC VPQPQHGSGS KAVQPQCVTG SKVSDQCNQM DVTGSFGTEQ 240 NLSIEEHEMK EEEDADEGEN LPPGSYDILQ LEKEEILAPH THFCTICGKG FKRDANLRMH 300 MRGHGDEYKT PAALAKPNKE SSSEPVIIKR YSCPFAGCKR NKDHKKFQPL KTILCVKNHY 360 KRTHCDKSYI CSRCNTKKFS VMADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG 420 HTPAIPLEET KGPSLSCDKM DGNEASNKSG NINFSFGSNA GGGAQNIIEV KEDADDPANY 480 FSPLSFDTCN FGGFHEFPRP TFDDSESSFS FLEAP*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MEPNDRLSLD AWANPSSSCN GLPRKMSLEN PSFTNFNLQQ QEQKWDDTSI LNYGIRIEPP  60
FLEFNQASES EYLLSSTCNN QPKVLDQEDG LNSEALQTSK SLDWDPRTML NNLSFLEQKI  120
HHLQDLVHLI VGRKGQALGG HDQLVTQQQQ LITADLTSII VQLISTAGSL LPSVKHKLST  180
GPPNGQLGEL LFPPLAGMNC VPQPQHGSGS KAVQPQCVTG SKVSDQCNQM DVTGSFGTEQ  240
NLSIEEHEMK EEEDADEGEN LPPGSYDILQ LEKEEILAPH THFCTICGKG FKRDANLRMH  300
MRGHGDEYKT PAALAKPNKE SSSEPVIIKR YSCPFAGCKR NKDHKKFQPL KTILCVKNHY  360
KRTHCDKSYI CSRCNTKKFS VMADLKTHEK HCGKDKWLCS CGTTFSRKDK LFGHIALFQG  420
HTPAIPLEET KGPSLSCDKM DGNEASNKSG NINFSFGSNA GGGAQNIIEV KEDADDPANY  480
FSPLSFDTCN FGGFHEFPRP TFDDSESSFS FLEAP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0179s0170.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB811778	0.0	AB811778.1 Populus nigra PnSTOP1 mRNA for STOP1-like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006376312.1	0.0	protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	B9MW64	0.0	B9MW64_POPTR; Uncharacterized protein
STRING	POPTR_0013s11900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0179s0170.1.p

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]