PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0178s0150.10.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 537aa MW: 58569.9 Da PI: 6.6862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0178s0150.10.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.2	5.2e-17	260	309	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lrel+P+ ++K +Ka+ L +++eY++ Lq SapurV1A.0178s0150.10.p 260 RSKHSATEQRRRSKINDRFQTLRELIPHG----DQKRDKASFLLEVIEYVQFLQ 309 889***********************7....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-25	255	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-19	256	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.844	258	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-14	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.72E-16	260	313	No hit	No description
SMART	SM00353	1.7E-13	264	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MELPQQSPFG TEGRKPPHDF LSLDSHSSTV QQDPTPPSQG GFLQTHDFLQ PLERVSKATA 60 IEVEILTIEK PPPPAPPPSV EHILPGGIGT YSISHVSYFN QRVPKPENAL FSVAQASSTD 120 KNDENSNCSS YSASGFTLWE ESALKMGKTG KENVGERSNI IREAAVKSGQ WTTSERPSHS 180 SSNNHRNSFS SLSSSQPPGL KSTQSFIEMI QSAKGSTLDD DLDDEETFLL KKETPSPIHK 240 GELRVKIDGK SNDQKPNTPR SKHSATEQRR RSKINDRFQT LRELIPHGDQ KRDKASFLLE 300 VIEYVQFLQE KVQKYEGSYQ GWNHELAKLG PWRNNTRPVE SSIDQSRGVN SGVSPALLLA 360 AKLDEKNITI SSSINPGGAR NPDESDTSSA STFNAMDHQP GITNKAMPFP ISLQPNLFNT 420 GRIAGAAAQF LPRLAFDAEN TETEPQPHPQ PWHAISCTSD GAVASDKLKQ QNLTVEGGTI 480 SISSAYSQGL LNTLTQALQS SGVDLSQASV SVQIELGKKG NSRQTAPTSI VKIYWH*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MELPQQSPFG TEGRKPPHDF LSLDSHSSTV QQDPTPPSQG GFLQTHDFLQ PLERVSKATA  60
IEVEILTIEK PPPPAPPPSV EHILPGGIGT YSISHVSYFN QRVPKPENAL FSVAQASSTD  120
KNDENSNCSS YSASGFTLWE ESALKMGKTG KENVGERSNI IREAAVKSGQ WTTSERPSHS  180
SSNNHRNSFS SLSSSQPPGL KSTQSFIEMI QSAKGSTLDD DLDDEETFLL KKETPSPIHK  240
GELRVKIDGK SNDQKPNTPR SKHSATEQRR RSKINDRFQT LRELIPHGDQ KRDKASFLLE  300
VIEYVQFLQE KVQKYEGSYQ GWNHELAKLG PWRNNTRPVE SSIDQSRGVN SGVSPALLLA  360
AKLDEKNITI SSSINPGGAR NPDESDTSSA STFNAMDHQP GITNKAMPFP ISLQPNLFNT  420
GRIAGAAAQF LPRLAFDAEN TETEPQPHPQ PWHAISCTSD GAVASDKLKQ QNLTVEGGTI  480
SISSAYSQGL LNTLTQALQS SGVDLSQASV SVQIELGKKG NSRQTAPTSI VKIYWH*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0178s0150.10.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322046.3	0.0	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-125	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1XI22	0.0	A0A2K1XI22_POPTR; Uncharacterized protein
STRING	POPTR_0015s03550.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-123	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0178s0150.10.p

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]