PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0177s0310.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 336aa MW: 37920.1 Da PI: 8.4621 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.5 | 6.4e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg+srsrk++e SapurV1A.0177s0310.2.p 77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKSRSRKPVE 120 79***************************************986 PP | |||||||
2 | QLQ | 59.8 | 8e-21 | 12 | 46 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT +Q+q+L++Q+l+yKy+++++PvPpeLl a++ SapurV1A.0177s0310.2.p 12 PFTSTQWQELEHQALIYKYMVSGVPVPPELLYAVK 46 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-12 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.6E-16 | 12 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.914 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.941 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.0E-20 | 78 | 120 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MLNTAITRNR FPFTSTQWQE LEHQALIYKY MVSGVPVPPE LLYAVKRSLE SSLASRLFPH 60 QPSGWGCFQA GFGRKADPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKSRSRKPVE 120 LASSTPTTTA TIPLINRNLS NPTVSPSSSS YSFSHPSSSA ESEVYAHQNS SHRTFLYPHS 180 SSSGPPESVF YPQNSTPHNL FLEPGSSPHA DKQHRHYHGM REDVDERAFF PDGLVRARGV 240 QDSYNQLPMS SYKGYSLPQF QTFADTSKEE QPQPGQHCFV LGTDIIKSSA TRSIKLEKET 300 ETLKPLHHFF DQWEPKDADS WLDLASSSRP HTADD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0177s0310.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217588 | 1e-103 | AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035717.1 | 0.0 | PREDICTED: growth-regulating factor 5-like | ||||
TrEMBL | A0A2K2BZ13 | 0.0 | A0A2K2BZ13_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s16920.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-63 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0177s0310.2.p |