PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0177s0130.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 350aa    MW: 38464.1 Da    PI: 6.4604
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0177s0130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-154587145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                            rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  SapurV1A.0177s0130.2.p 45 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 87
                            899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.17E-202594IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-52538IPR009057Homeodomain-like
PROSITE profilePS500904.0542639IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-253995IPR009057Homeodomain-like
PROSITE profilePS5129425.2094094IPR017930Myb domain
SMARTSM007171.5E-154492IPR001005SANT/Myb domain
PfamPF002493.2E-144588IPR001005SANT/Myb domain
CDDcd001672.56E-114787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKSIFRSLNL QVFASSTLFL GAGLQRCGKS CRLRWINYLR PDLKRGSFSP QEAALIIELH  60
SILGNRWAQI AKHLPGRTDN EVKNFWNSSI KKKLISHDQV PGLAAFTDHI VHNPSVPEEA  120
FLSLNVNPNL ILTAHHHDHH QLYLPSPTSI LQSFGQGDFK FNQPDNYNVD LTHFSPTAPL  180
ILPPLNDNSS SFDPLWSLPY LPQHLDQNQE DHHQSLSNGA IPAHYIGEKV ATHDESMITA  240
TMSYDNQSMA ASMMPRIFEI IEGDIVCSMP PSSESQDPAH DPLPRLSSLP SGPYPVHGVA  300
TRQLDSIDAI MSSLSSSSSS TSSSSSSSLS PFSSSQFLAN PHLPSSWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-25269440108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0177s0130.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4765811e-36AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369254.10.0transcription factor MYB26
TrEMBLB9N1B90.0B9N1B9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s20370.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-50myb domain protein 26