PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0510.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 845aa MW: 94303.8 Da PI: 7.7447 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 47.3 | 5.5e-15 | 6 | 36 | 47 | 77 |
SSEEETTT--SS--S-STTTT-------S-- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77 +rfh+l+efDe+krsCrrrLa+hn+rrrk++ SapurV1A.0176s0510.4.p 6 GRFHDLQEFDEGKRSCRRRLAGHNKRRRKTH 36 7****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 14.622 | 1 | 35 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.39E-11 | 6 | 40 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.7E-8 | 6 | 34 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-4 | 6 | 22 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 7.74E-8 | 612 | 728 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.5E-6 | 614 | 743 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.00E-7 | 615 | 727 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MVIIMGRFHD LQEFDEGKRS CRRRLAGHNK RRRKTHLENL VNEGSLNDEK ANSYLLISLL 60 RILSNMHSNS SDQTKDQDLL SHILKSLANL AGATNGRSLS GSLQGSQGLA TARAIVRNHD 120 KAQDALTNGP ESARPSSSAS RKDDCIISQD HPRPLGQCGT VPISDLVVQK RILDNDAQVG 180 TLQARSGSQS ITLFPSRNNL RAKTNEPETT VGKIKLNNFD LNNAYDDSQH YVENLERSHA 240 PVDAGMGSFS CPSDSQKTSP PHTSGKSDST FSQSPSSSSG EAQIRTDRIV FKLFGKDPND 300 FPVALRAQIL DWLSHSPMDI ESYIRPGCIV LTIYLCLEKS KWEEVCLDLG ASLNRLLNAS 360 SDSFWQTGWV HVRVQNCISF IYNGRVVLDT PLPIKSHKNC RISSITPIAV SLSERTQFVV 420 RGFNIARPMT RLLCAVEGKY LVQETCYDLM GGADTMNELD KPQHLNFQCS VPNFVGRGFI 480 EVEDHGLSSS FFPFIVAEPE ICSEIRMLED AIMVAETATD MHTIAERMDI KNQALDFIHE 540 MGWLLHRSRL KFRMGQLDPN LDLFPFKRFK WLIQFSMDHD WCAVVRKLLA IVLDGTVDAG 600 EHSSIELALL DMGLLHQAVR RNCRPMVELL LRYIPDKKIG GTGTQQNQLV YGRNSRFMFK 660 PDVVGPAGLT PLHVAASGDG AEDVLDALTD DPGLVGIDAW KRARDSTGLT PYDYAYLRDH 720 HSYIHLIQRK INKKSESGDV VLDIPSSLVD CNFKQKDGQK LPKVTSLHTE KIKMKETHQH 780 CCKLCEQKLV FAASRTSLVY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV FQPFRWELLK 840 YGSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 35 | KRRRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0510.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 1e-174 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311356.2 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | B9HIH2 | 0.0 | B9HIH2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09810.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0510.4.p |