PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0176s0510.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 845aa    MW: 94303.8 Da    PI: 7.7447
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0176s0510.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP47.35.5e-156364777
                            SSEEETTT--SS--S-STTTT-------S-- CS
                     SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkq 77
                            +rfh+l+efDe+krsCrrrLa+hn+rrrk++
  SapurV1A.0176s0510.4.p  6 GRFHDLQEFDEGKRSCRRRLAGHNKRRRKTH 36
                            7****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114114.622135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.39E-11640IPR004333Transcription factor, SBP-box
PfamPF031104.7E-8634IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.6E-4622IPR004333Transcription factor, SBP-box
SuperFamilySSF484037.74E-8612728IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-6614743IPR020683Ankyrin repeat-containing domain
CDDcd002045.00E-7615727No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MVIIMGRFHD LQEFDEGKRS CRRRLAGHNK RRRKTHLENL VNEGSLNDEK ANSYLLISLL  60
RILSNMHSNS SDQTKDQDLL SHILKSLANL AGATNGRSLS GSLQGSQGLA TARAIVRNHD  120
KAQDALTNGP ESARPSSSAS RKDDCIISQD HPRPLGQCGT VPISDLVVQK RILDNDAQVG  180
TLQARSGSQS ITLFPSRNNL RAKTNEPETT VGKIKLNNFD LNNAYDDSQH YVENLERSHA  240
PVDAGMGSFS CPSDSQKTSP PHTSGKSDST FSQSPSSSSG EAQIRTDRIV FKLFGKDPND  300
FPVALRAQIL DWLSHSPMDI ESYIRPGCIV LTIYLCLEKS KWEEVCLDLG ASLNRLLNAS  360
SDSFWQTGWV HVRVQNCISF IYNGRVVLDT PLPIKSHKNC RISSITPIAV SLSERTQFVV  420
RGFNIARPMT RLLCAVEGKY LVQETCYDLM GGADTMNELD KPQHLNFQCS VPNFVGRGFI  480
EVEDHGLSSS FFPFIVAEPE ICSEIRMLED AIMVAETATD MHTIAERMDI KNQALDFIHE  540
MGWLLHRSRL KFRMGQLDPN LDLFPFKRFK WLIQFSMDHD WCAVVRKLLA IVLDGTVDAG  600
EHSSIELALL DMGLLHQAVR RNCRPMVELL LRYIPDKKIG GTGTQQNQLV YGRNSRFMFK  660
PDVVGPAGLT PLHVAASGDG AEDVLDALTD DPGLVGIDAW KRARDSTGLT PYDYAYLRDH  720
HSYIHLIQRK INKKSESGDV VLDIPSSLVD CNFKQKDGQK LPKVTSLHTE KIKMKETHQH  780
CCKLCEQKLV FAASRTSLVY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV FQPFRWELLK  840
YGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0176s0510.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091031e-174AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311356.20.0squamosa promoter-binding-like protein 1
TrEMBLB9HIH20.0B9HIH2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09810.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1