PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0176s0510.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 1035aa    MW: 115699 Da    PI: 7.5952
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0176s0510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.7e-40150226177
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                             +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk++
  SapurV1A.0176s0510.2.p 150 VCQVEDCRADLSNAKDYHRRHKVCDAHSKASKALVGNVMQRFCQQCSRFHDLQEFDEGKRSCRRRLAGHNKRRRKTH 226
                             6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-32145212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.111148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-37149230IPR004333Transcription factor, SBP-box
PfamPF031103.4E-29151224IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.05E-7802918IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-6804933IPR020683Ankyrin repeat-containing domain
CDDcd002044.65E-7805917No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1035 aa     Download sequence    Send to blast
MEATIGGKSR HFYGPVVSDL KEDGKKNLEW DLNDWKWDGD LFTASPMNSA PSDCRSRQLF  60
PTGPVLNENA GLWNSSSYCS DDNDNLGGEK GKRELEKRRR VVFVEDEDLN YEVGSLNLKL  120
GEQVYPIMDE DAKSGKKKTK VTMTASNRAV CQVEDCRADL SNAKDYHRRH KVCDAHSKAS  180
KALVGNVMQR FCQQCSRFHD LQEFDEGKRS CRRRLAGHNK RRRKTHLENL VNEGSLNDEK  240
ANSYLLISLL RILSNMHSNS SDQTKDQDLL SHILKSLANL AGATNGRSLS GSLQGSQGLA  300
TARAIVRNHD KAQDALTNGP ESARPSSSAS RKDDCIISQD HPRPLGQCGT VPISDLVVQK  360
RILDNDAQVG TLQARSGSQS ITLFPSRNNL RAKTNEPETT VGKIKLNNFD LNNAYDDSQH  420
YVENLERSHA PVDAGMGSFS CPSDSQKTSP PHTSGKSDST FSQSPSSSSG EAQIRTDRIV  480
FKLFGKDPND FPVALRAQIL DWLSHSPMDI ESYIRPGCIV LTIYLCLEKS KWEEVCLDLG  540
ASLNRLLNAS SDSFWQTGWV HVRVQNCISF IYNGRVVLDT PLPIKSHKNC RISSITPIAV  600
SLSERTQFVV RGFNIARPMT RLLCAVEGKY LVQETCYDLM GGADTMNELD KPQHLNFQCS  660
VPNFVGRGFI EVEDHGLSSS FFPFIVAEPE ICSEIRMLED AIMVAETATD MHTIAERMDI  720
KNQALDFIHE MGWLLHRSRL KFRMGQLDPN LDLFPFKRFK WLIQFSMDHD WCAVVRKLLA  780
IVLDGTVDAG EHSSIELALL DMGLLHQAVR RNCRPMVELL LRYIPDKKIG GTGTQQNQLV  840
YGRNSRFMFK PDVVGPAGLT PLHVAASGDG AEDVLDALTD DPGLVGIDAW KRARDSTGLT  900
PYDYAYLRDH HSYIHLIQRK INKKSESGDV VLDIPSSLVD CNFKQKDGQK LPKVTSLHTE  960
KIKMKETHQH CCKLCEQKLV FAASRTSLVY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV  1020
FQPFRWELLK YGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-311502241084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRV
2219225KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0176s0510.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091030.0AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311356.20.0squamosa promoter-binding-like protein 1
TrEMBLB9HIH20.0B9HIH2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09810.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1