PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0510.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 1035aa MW: 115699 Da PI: 7.5952 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.4 | 2.7e-40 | 150 | 226 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk++ SapurV1A.0176s0510.1.p 150 VCQVEDCRADLSNAKDYHRRHKVCDAHSKASKALVGNVMQRFCQQCSRFHDLQEFDEGKRSCRRRLAGHNKRRRKTH 226 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-32 | 145 | 212 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.111 | 148 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-37 | 149 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.4E-29 | 151 | 224 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 1.05E-7 | 802 | 918 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.4E-6 | 804 | 933 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.65E-7 | 805 | 917 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1035 aa Download sequence Send to blast |
MEATIGGKSR HFYGPVVSDL KEDGKKNLEW DLNDWKWDGD LFTASPMNSA PSDCRSRQLF 60 PTGPVLNENA GLWNSSSYCS DDNDNLGGEK GKRELEKRRR VVFVEDEDLN YEVGSLNLKL 120 GEQVYPIMDE DAKSGKKKTK VTMTASNRAV CQVEDCRADL SNAKDYHRRH KVCDAHSKAS 180 KALVGNVMQR FCQQCSRFHD LQEFDEGKRS CRRRLAGHNK RRRKTHLENL VNEGSLNDEK 240 ANSYLLISLL RILSNMHSNS SDQTKDQDLL SHILKSLANL AGATNGRSLS GSLQGSQGLA 300 TARAIVRNHD KAQDALTNGP ESARPSSSAS RKDDCIISQD HPRPLGQCGT VPISDLVVQK 360 RILDNDAQVG TLQARSGSQS ITLFPSRNNL RAKTNEPETT VGKIKLNNFD LNNAYDDSQH 420 YVENLERSHA PVDAGMGSFS CPSDSQKTSP PHTSGKSDST FSQSPSSSSG EAQIRTDRIV 480 FKLFGKDPND FPVALRAQIL DWLSHSPMDI ESYIRPGCIV LTIYLCLEKS KWEEVCLDLG 540 ASLNRLLNAS SDSFWQTGWV HVRVQNCISF IYNGRVVLDT PLPIKSHKNC RISSITPIAV 600 SLSERTQFVV RGFNIARPMT RLLCAVEGKY LVQETCYDLM GGADTMNELD KPQHLNFQCS 660 VPNFVGRGFI EVEDHGLSSS FFPFIVAEPE ICSEIRMLED AIMVAETATD MHTIAERMDI 720 KNQALDFIHE MGWLLHRSRL KFRMGQLDPN LDLFPFKRFK WLIQFSMDHD WCAVVRKLLA 780 IVLDGTVDAG EHSSIELALL DMGLLHQAVR RNCRPMVELL LRYIPDKKIG GTGTQQNQLV 840 YGRNSRFMFK PDVVGPAGLT PLHVAASGDG AEDVLDALTD DPGLVGIDAW KRARDSTGLT 900 PYDYAYLRDH HSYIHLIQRK INKKSESGDV VLDIPSSLVD CNFKQKDGQK LPKVTSLHTE 960 KIKMKETHQH CCKLCEQKLV FAASRTSLVY RPAMLSMVAI AAVCVCVALL FKSCPEVLYV 1020 FQPFRWELLK YGSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-31 | 150 | 224 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | KRRRV |
2 | 219 | 225 | KRRRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0510.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 0.0 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311356.2 | 0.0 | squamosa promoter-binding-like protein 1 | ||||
TrEMBL | B9HIH2 | 0.0 | B9HIH2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09810.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1539 | 34 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 0.0 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0510.1.p |