PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 293aa MW: 34186.3 Da PI: 9.0552 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98 | 4e-31 | 61 | 111 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ SapurV1A.0176s0500.1.p 61 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYST 111 79***********************************************96 PP | |||||||
2 | K-box | 100.9 | 1.7e-33 | 129 | 226 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 +++++s + + +++ e++ Lk+++e Lqr++Rh+lGedL+s slkeLq+Leqq++++lk+iR++Kn+l++++i+elq ke++l+e SapurV1A.0176s0500.1.p 129 ERQSVSPDLDSQGNWTLEYNMLKAKVELLQRNHRHYLGEDLDSVSLKELQNLEQQIDTALKHIRARKNHLMYQSISELQIKERALRE 215 55666655666799************************************************************************* PP K-box 90 enkaLrkklee 100 +n++L k+++e SapurV1A.0176s0500.1.p 216 QNNMLVKQIKE 226 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.142 | 53 | 113 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-40 | 53 | 112 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.21E-41 | 54 | 131 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-33 | 54 | 143 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 55 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 55 | 109 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-25 | 62 | 109 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 75 | 90 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-31 | 90 | 111 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.7E-28 | 139 | 224 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.576 | 140 | 230 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MISKRNFTFI ILFLFLSISH FLGVQDCCFL RFFFGSGSWV ILREKRRGQE REMGRGRVQL 60 KRIENKINRQ VTFSKRRAGL LKKAHEISVL CDAEVALIVF SHKGKLFEYS TNACMEKILE 120 RYERCSYAER QSVSPDLDSQ GNWTLEYNML KAKVELLQRN HRHYLGEDLD SVSLKELQNL 180 EQQIDTALKH IRARKNHLMY QSISELQIKE RALREQNNML VKQIKEKEKA LAQLALRDQQ 240 NDGPNPSSFF SPQPPLPCLN IRYQEEDTEA RRNELDLTLE PIYSCHPGCF GT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_B | 6e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_C | 6e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
6byy_D | 6e-20 | 53 | 137 | 1 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY615964 | 0.0 | AY615964.1 Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311353.2 | 1e-146 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Swissprot | Q6E6S7 | 1e-128 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | S5PTH2 | 1e-145 | S5PTH2_9ROSI; APETALA1-like MADS-box AP1-1 | ||||
STRING | cassava4.1_029935m | 1e-138 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-106 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0500.1.p |
Publications ? help Back to Top | |||
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