PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0470.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 512aa MW: 56033.6 Da PI: 7.3796 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.2 | 1.8e-41 | 166 | 241 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dl++ k+yh+rh+vCevhsk+++v+v+g+eqrfCqqCsrfh l +fD++krsCr+rLa+hnerrrk+q SapurV1A.0176s0470.4.p 166 CQVYGCNKDLTSSKDYHKRHRVCEVHSKTAQVIVNGIEQRFCQQCSRFHLLVDFDDGKRSCRKRLAGHNERRRKPQ 241 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-31 | 161 | 227 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.06 | 163 | 240 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 7.26E-39 | 164 | 245 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.0E-31 | 166 | 239 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MDFWSYAAEG KGLLFSDEID LSVDSFARSR KALIGWDTES VESTEFIDFG FSEIPRKPFH 60 GSKTGVGMFG GTDVGDDPSK LLASSPNCMI ASNSSMESGS NHSNSLVESN SQDSSLIDLK 120 LGTLADFKDA QNSKFSKERL LLSSVSPTAQ AKRARTTCSR PQTTFCQVYG CNKDLTSSKD 180 YHKRHRVCEV HSKTAQVIVN GIEQRFCQQC SRFHLLVDFD DGKRSCRKRL AGHNERRRKP 240 QLGTLSVKPH KLLLPYQGSK FLGTSFPKKT SLLFPNMLPG STFYPENYEE ENWCRRIKLE 300 ENSIYSSSSA IPLGNGQLLP KSFLHLHGNG LQKTCGISPP AIDDGNFSNM GTFHELAGAL 360 PSSCALSLLS AESQDLSHSA GNISARPLVS QVSRARHSLD IVNKSSGVGS LDKYLPNGLY 420 SSGTNFTEVN NMGPFVVSGS GHASDFQVET DGFLHQSDIL NAKYCVSPET GSTVDLLQLS 480 SHLQRVEQQR NSIQVKHENE DFCSFGSTYG V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 165 | 239 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0470.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018928.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011018937.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011018949.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | B9HIG5 | 0.0 | B9HIG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09750.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 9e-53 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0470.4.p |