PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0176s0460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family YABBY
Protein Properties Length: 188aa    MW: 20940 Da    PI: 9.5534
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0176s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY165.54e-51191714162
                   YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                             + sse++Cyv+CnfC t+lav +P++ l+ +vtvrCGhC +l  ++ +  +q +   +h + sl+    +e+   +e+l   +  ++
  SapurV1A.0176s0460.1.p  19 VPSSEHLCYVRCNFCGTVLAVGIPFKKLLDTVTVRCGHCNNLSFLSTRPPNQGQY-LDHHQLSLQGVSSNEKFLFKEKLGFCTDIRK 104
                             5789************************************987766665555443.4443444444444444334444443333332 PP

                   YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                              +s+     + s+++++ vp +p v++PPek+ r Psaynrf+keeiqrika++P+i hreafs+aaknWa 
  SapurV1A.0176s0460.1.p 105 GESS-----SSSTSREQMVPTAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAADPEIPHREAFSTAAKNWAR 171
                             2222.....2356789999*9999**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046908.4E-5421171IPR006780YABBY protein
SuperFamilySSF470953.01E-7122171IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-4126171IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MFFPCCLKMN LEEKASTEVP SSEHLCYVRC NFCGTVLAVG IPFKKLLDTV TVRCGHCNNL  60
SFLSTRPPNQ GQYLDHHQLS LQGVSSNEKF LFKEKLGFCT DIRKGESSSS STSREQMVPT  120
APFVVKPPEK KHRLPSAYNR FMKEEIQRIK AADPEIPHRE AFSTAAKNWA RARYLPKSGG  180
GSGSPNK*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0176s0460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311351.21e-112protein CRABS CLAW
SwissprotQ76EJ01e-57YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLB9HIG41e-111B9HIG4_POPTR; Uncharacterized protein
STRINGPOPTR_0008s09740.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-57YABBY family protein