PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0175s0180.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23077 Da PI: 4.7923 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.7 | 1.5e-23 | 21 | 67 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kr+e +snr+vtfskR+ng++KKA ELS+LC+ae aviifs++ kl+ SapurV1A.0175s0180.1.p 21 KRVEKESNRYVTFSKRKNGLFKKATELSTLCGAETAVIIFSEHRKLF 67 799***************************************99985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.535 | 13 | 73 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-26 | 13 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 15 | 35 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-26 | 16 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.11E-32 | 16 | 82 | No hit | No description |
Pfam | PF00319 | 5.9E-23 | 22 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 35 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-19 | 50 | 71 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
EPAAAAGDTQ DQQRPQKIEI KRVEKESNRY VTFSKRKNGL FKKATELSTL CGAETAVIIF 60 SEHRKLFSCG QPDVDQVLDR YLAETERVPN NFPSLIKNNV ENQLANKQEY AESLKRLEEE 120 QTVAKMIGSM NNMNGGGFWW DLPIDNMEQD ELEAYRESME ELKKNLIARL GLIESTCNAL 180 SESRIANSFI NLKEIPYSFS FN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-16 | 16 | 83 | 3 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-16 | 16 | 83 | 3 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-16 | 16 | 83 | 3 | 70 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-16 | 16 | 83 | 3 | 70 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0175s0180.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323594.2 | 1e-113 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443414.1 | 1e-113 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024443416.1 | 1e-113 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3N7G457 | 1e-112 | A0A3N7G457_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s12640.1 | 1e-113 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0175s0180.1.p |