PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0174s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 14466.9 Da PI: 10.6237 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.7e-13 | 5 | 86 | 2 | 83 |
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 k lt+ d + +rl+lp kf++ +g++ + +l+ desg +W+++++ rkk+ vl+kGW F++ ++Lk gD v F SapurV1A.0174s0200.1.p 5 SKLLTKTDIH--KRLSLPTKFFKPPpsfKGSHVQ--DLQAIDESGFVWTFQCSTRKKGHPkPVLSKGWLAFARHKELKNGDRVKFF 86 5555444444..46********666988667666..7***************765554447********************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.839 | 2 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-15 | 4 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-13 | 4 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.66E-15 | 4 | 89 | No hit | No description |
SMART | SM01019 | 0.0014 | 4 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-9 | 6 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MAEFSKLLTK TDIHKRLSLP TKFFKPPPSF KGSHVQDLQA IDESGFVWTF QCSTRKKGHP 60 KPVLSKGWLA FARHKELKNG DRVKFFKEKH QIVPATPLYR IETEREIKIF GVIFGYSPIV 120 APFHE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0174s0200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025074.1 | 2e-70 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9I5A2 | 1e-70 | B9I5A2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02070.1 | 2e-71 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0174s0200.1.p |