PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0173s0340.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23043.6 Da PI: 9.8365 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien+s r vtfskRrng++KKA ELSvLCd+++a++ifss+gklye+s SapurV1A.0173s0340.1.p 9 KRIENNSSRLVTFSKRRNGLFKKARELSVLCDVQIALLIFSSRGKLYEFS 58 79***********************************************8 PP | |||||||
2 | K-box | 45.2 | 4.1e-16 | 78 | 167 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++++ae + ++a k+ e L R+l G + +l +L +Le+qL+ +l+++R++K +l+le+++ l +ek+l een+ ++ SapurV1A.0173s0340.1.p 78 ATANHAEVNCGKHAYFKSHAELLLMIERKLEGPHAMEQTLSDLVELEKQLDAALTHVRARKIQLMLESVKSLHDQEKMLTEENQLIE 164 566777788889999999999999999*********************************************************999 PP K-box 96 kkl 98 k++ SapurV1A.0173s0340.1.p 165 KQI 167 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-29 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.37E-35 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.716 | 83 | 173 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-12 | 89 | 167 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRKKVELKR IENNSSRLVT FSKRRNGLFK KARELSVLCD VQIALLIFSS RGKLYEFSGV 60 DRTASILKRY ESRFEKVATA NHAEVNCGKH AYFKSHAELL LMIERKLEGP HAMEQTLSDL 120 VELEKQLDAA LTHVRARKIQ LMLESVKSLH DQEKMLTEEN QLIEKQIVAL MKDGKDSDHT 180 PGKDSDHTPG HPPQQITLSL LK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-18 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 4e-18 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 4e-18 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 4e-18 | 1 | 71 | 1 | 71 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0173s0340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452986.1 | 1e-103 | MADS-box protein FLOWERING LOCUS C | ||||
Refseq | XP_024452987.1 | 1e-103 | MADS-box protein FLOWERING LOCUS C | ||||
Refseq | XP_024452988.1 | 1e-103 | MADS-box protein FLOWERING LOCUS C | ||||
TrEMBL | A0A3N7EUB6 | 1e-101 | A0A3N7EUB6_POPTR; Uncharacterized protein | ||||
STRING | EOX99786 | 1e-55 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14472 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 1e-45 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0173s0340.1.p |