PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0173s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 334aa    MW: 36626.7 Da    PI: 8.6425
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0173s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.23e-4044120278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             C v+gC++dl+++++yhrrhkvCe hsk+ +v+v+g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  SapurV1A.0173s0270.1.p  44 CLVDGCTSDLTKCRDYHRRHKVCELHSKSRQVFVRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 120
                             **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.7E-3238105IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.73541118IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-3842123IPR004333Transcription factor, SBP-box
PfamPF031102.8E-2944117IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMMMTFCERR DKYKYPRDSL MESASSESSK RAKTLKNATR VPSCLVDGCT SDLTKCRDYH  60
RRHKVCELHS KSRQVFVRGQ EQRFCQQCSR FHSLGEFDEG KRSCRKRLDG HNRRRRKPQP  120
EPLSLNSASI FSNQGTRYLH FGSSQIFSTS AMNTVWTGAA KAESDDPMLH TSDQSSMNFG  180
GRKNLFPGSL SFNYKEGKQF PFLQGTCSTD PGDSVHLDGS STLGNSGNGQ KMFSDGLNRA  240
IDSSRALSLL SSPPSGTREI GLSDIMQPDL NSPAQSLIPS LNYNALGMES EPAGSVLVSD  300
GSGGNANGQH MFQIGPDGSS ADGSHQTLSF SWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29441171184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100117KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0173s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020783.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020784.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020785.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020786.10.0PREDICTED: squamosa promoter-binding-like protein 16
RefseqXP_011020787.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A385JHW40.0A0A385JHW4_POPTO; Squamosa promoter-binding protein-like
TrEMBLB9GZN10.0B9GZN1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-48SBP family protein