PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0173s0150.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 300aa MW: 32045.7 Da PI: 6.8037

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0173s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112	8.1e-35	55	141	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+W lqqa+++i+++tgt++++as+ + s+s++ +s SapurV1A.0173s0150.1.p 55 APKRSSNKDRHKKVEGRGRRIRIPALCAARIFQLTKELGHKSDGETIQWILQQAEASIIAATGTGTIPASALaA-AGASVSEQGDSV 140 789******************************************************************98854.444444443333 PP TCP 88 g 88 + SapurV1A.0173s0150.1.p 141 S 141 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-28	60	152	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.771	61	115	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEPVNPDQHQ PQMPSFLNLP HEGSMSESSI SNKPSEIEDF QNMIAYKDNN KKKLAPKRSS 60 NKDRHKKVEG RGRRIRIPAL CAARIFQLTK ELGHKSDGET IQWILQQAEA SIIAATGTGT 120 IPASALAAAG ASVSEQGDSV STGLHAKTEG LGLGVTGSRD GNDWSMMNTK LGVSSMANGV 180 WPSVGGIGLG SVPNSGQSTS NFGNENSNNL PKYGFSGVDF PNINMGLMSF YSMFSGTSQQ 240 LPGLELGLSQ DGRSGMLNPQ ALNPFYHQLV QGRGVLDSLN QEKQQEQPPD KDDSQGSRQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0173s0150.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011020810.1	1e-177	PREDICTED: transcription factor TCP20-like
Swissprot	Q9LSD5	9e-67	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2K2B8C4	1e-175	A0A2K2B8C4_POPTR; Uncharacterized protein
STRING	POPTR_0003s16630.1	1e-177	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0173s0150.1.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]