PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0168s0440.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 383aa    MW: 41819.3 Da    PI: 8.2393
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0168s0440.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.1e-4193170178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +C v+gC++dls++++yhrrhkvCe hsk+p+v+v g++qrfCqqCsrfh+l++fDe+krsCr+rL++hn+rrrk+q+
  SapurV1A.0168s0440.2.p  93 MCLVDGCNSDLSTCRDYHRRHKVCELHSKTPQVTVGGQKQRFCQQCSRFHSLEQFDEGKRSCRKRLDGHNRRRRKPQP 170
                             6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-3487155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7791168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.19E-3892173IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3094167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDWDLKATSW DLSEFEQGPV PGISIDAFDR STNFGVNRSG GGFSIDLKLG RVGNSSDESI  60
IDWKQPGVSK LQPLPSGSTK RARGANSGAQ VAMCLVDGCN SDLSTCRDYH RRHKVCELHS  120
KTPQVTVGGQ KQRFCQQCSR FHSLEQFDEG KRSCRKRLDG HNRRRRKPQP DPHLRPPSFL  180
SNYQGTQLFP FSSSHVYPSS TVLNPTWSGV ANTEGDGTHQ NLHQLPDKQN LFFGSSSSSC  240
EGGKRFPFLQ YHGTGLNNQT SPEASVCQPL PRVVALPGSS GASSHSMFCD RLTTQIQDSD  300
CALSLLSSTQ THASGNLMVQ HYSVPLSHPI GQSVHDHGLG PIDSVLVFNN RDANVHFPGT  360
FQPQSGSSSG NRAPQTLPFN WE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-2884167184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0168s0440.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322273.30.0squamosa promoter-binding-like protein 13A
RefseqXP_024441807.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441808.10.0squamosa promoter-binding-like protein 13A
RefseqXP_024441809.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2K1XKS20.0A0A2K1XKS2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11100.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-74SBP family protein