PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0167s0250.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 339aa    MW: 37445.2 Da    PI: 10.3275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0167s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.8e-30269327259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+H+h+
  SapurV1A.0167s0250.2.p 269 TDDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAPDDSMMLIVTYEGDHHHS 327
                             69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-17221266IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.0E-33256329IPR003657WRKY domain
PROSITE profilePS5081131.031263329IPR003657WRKY domain
SuperFamilySSF1182904.71E-26266329IPR003657WRKY domain
SMARTSM007745.4E-35268328IPR003657WRKY domain
PfamPF031068.3E-26270326IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAMELMMGYS GDSLATKMQK NAVREAATSG IQSVEEVIKL LRQNQLEQQQ INIMTVTDMA  60
VNNFRKVISL LGRTTRTGHA RFRRAPVTSP AQQQKQEEPE SQQEKRQVQE PGPSVRAINS  120
QPTEQGSAFR DYQPTPIHRL PPLPHNQQQK SPLLVTIKGL SDRNETPTTI NFSNSPSISS  180
ATSFMSSLTG ETDSFQRSMS SGFHFTQPSA GKPPLSTSSS KRKCDSMDGA ALKCGSSSGR  240
CHCSKKRKSR VKRVVRVPAT SNKMADIPTD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC  300
PARKHVERAP DDSMMLIVTY EGDHHHSHPF GDAPVESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22256331276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0167s0250.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017162.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-114WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A3N7EKI60.0A0A3N7EKI6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12480.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.16e-98WRKY DNA-binding protein 7