PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0167s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 341aa    MW: 36960.3 Da    PI: 5.0807
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0167s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15146192455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  SapurV1A.0167s0140.1.p 146 VHNLSEKRRRSRINEKMIALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 192
                             6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-20139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-19139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.466142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-13145187No hitNo description
PfamPF000108.3E-13146192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-17148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADLYGPARS PANEPEENSS FFQQFLRCNS YSSSSKLNHH ALSTPVETGS AAVELLDCPL  60
FGWSETECGA GAGKSGVNFS DPGGYYVKES VENAVSSGVS KRRGVSAQDD LGDFSCDSEK  120
GAEVAEMQAN TVRPRSSSKR SRAAEVHNLS EKRRRSRINE KMIALQNLIP NSNKTDKASM  180
LDEAIEYLKQ LQLQLQMLTM RNGLSLHPMC LPGAPQPMQL PLSGMSFDEG NGLLITNTLK  240
GIFSADEESS VQTALNLPSH CTDSNQPIAV PSGTNITSSE ANFGYEPLIH VNHATFNLCT  300
SSKEICREGI PEAQLEMNQT VRTSPFGVSL FCFNLQIHDQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0167s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017181.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLB9GNU60.0B9GNU6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12600.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-32bHLH family protein