PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0166s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WOX
Protein Properties Length: 264aa    MW: 29626.2 Da    PI: 5.106
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0166s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-193292357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++q+++L+el++    r p+ +e+++++++l    +++ ++V++WFqN++a+e++
  SapurV1A.0166s0210.1.p 32 TRWTPTADQIRILKELYYIkgVRSPNGAEIQQISARLrkygKIEGKNVFYWFQNHKARERQ 92
                            8****************95469*************************************97 PP
2Wus_type_Homeobox1116.6e-363094265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRWtPt++Qi+iL+ely+ +G+r+Pn +eiq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
  SapurV1A.0166s0210.1.p 30 TSTRWTPTADQIRILKELYYiKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKK 94
                            789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-112493IPR009057Homeodomain-like
PROSITE profilePS5007110.0422793IPR001356Homeobox domain
SMARTSM003898.9E-52997IPR001356Homeobox domain
PfamPF000468.7E-173292IPR001356Homeobox domain
CDDcd000861.86E-63294No hitNo description
Gene3DG3DSA:1.10.10.601.8E-63292IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEPQQQQQHQ QQPDEDNNGG AKGSFLCRQT STRWTPTADQ IRILKELYYI KGVRSPNGAE  60
IQQISARLRK YGKIEGKNVF YWFQNHKARE RQKKIFTNEV PMQQRTSWKP EDYYSYKYSN  120
SNNNPGFSSS SANTGAVTVG QRDFHGYGSV TMQEKSFWDC PVPAGGSNIG SGGGSLMSNT  180
NYGSGISCTV FDQDQEADAE IETLPLFPMH GEEHVNGSFN INNINQDFYY SSCYGGSDND  240
YCNDSTSLEL SLYTYNGGQP QDY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0166s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2320640.0FJ232064.1 Populus tomentosa wuschel 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043203.11e-126PREDICTED: protein WUSCHEL
TrEMBLG8XRM01e-140G8XRM0_POPTO; Wuschel 2
STRINGPOPTR_0007s14130.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.15e-35WOX family protein