PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0164s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 726aa    MW: 79279.2 Da    PI: 6.3715
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0164s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.6e-14292351155
                     AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  SapurV1A.0164s0340.1.p 292 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 351
                             57*******************666664478446**********99*************98 PP
2AP246.68.4e-15394445155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  SapurV1A.0164s0340.1.p 394 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 445
                             57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-16292361IPR016177DNA-binding domain
PfamPF008474.2E-11292351IPR001471AP2/ERF domain
CDDcd000183.07E-21292361No hitNo description
PROSITE profilePS5103218.861293359IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-14293360IPR001471AP2/ERF domain
SMARTSM003801.5E-28293365IPR001471AP2/ERF domain
PRINTSPR003674.0E-6294305IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-17394455IPR016177DNA-binding domain
PfamPF008471.0E-9394445IPR001471AP2/ERF domain
CDDcd000182.47E-24394455No hitNo description
Gene3DG3DSA:3.30.730.105.4E-18395454IPR001471AP2/ERF domain
PROSITE profilePS5103219.045395453IPR001471AP2/ERF domain
SMARTSM003801.5E-33395459IPR001471AP2/ERF domain
PRINTSPR003674.0E-6435455IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MASTNKWLGF SLSPQELPSS QSDHQDHSQN KDSRLRFHSD EISGADHVSG ESFDLTSDST  60
APSLNLPASF GTFEAYRNNQ SQDWNNMKRF GMNADPNYST TSDVPIFLGS SCNSQNIDQI  120
QEPKLENFLG GHSFGNHEHK LIVCSTMYDT SGDYMFQNCS LQLPSEDASN ERTSSNGGGD  180
TSINNNNTNS SIGLSMIKTW LRNQPAPTQQ DTSNKSNGGA QSLSLSMSTG SQSAGSALPL  240
LAVNGGGSRT GGEQSFSDNN KQQKTTPSID TQTGAIETVP RKSIDTFGQR TSIYRGVTRH  300
RWTGRYEAHL WDNSCRREGQ TRKGRQVYLG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI  360
STYEKEVEEM KHMTRQEYVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  420
LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDMSRYDVN SIIESSTLPV GGAAKRLKEV  480
EHAEITTDVQ RIDDRDSSSS QLIDGTVNYS AAAHHGWPTI AFQQAQAFSM QYPYGQRVWC  540
KQEQDSDNHG YQEIHQLQLG NSQNFFQPSA LHNVMSMDSS SMEHSSCSDS VMYSGGGHDG  600
TSTGTNGSYH QGIGYGGNAG YAVPMATVIA NNGNTQDQGS GYGDGEGKAL GYENMFSSSD  660
PYHARNLYYL SQQSSSGVIK ASAYDQGSAC NSWVPTAVPT IAARSNNMAV CHGAPPPFTV  720
WNEST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0164s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462525.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLB9HHX90.0B9HHX9_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-126AP2 family protein