PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0162s0420.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 406aa    MW: 46057.1 Da    PI: 7.0511
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0162s0420.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.83.3e-31108212199
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+
  SapurV1A.0162s0420.1.p 108 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLYAGDIVSFQ 194
                             89****************************66677899************************************************* PP

                             E-.SS.SEE..EEEEE-S CS
                      B3  84 ld.gr.sefelvvkvfrk 99 
                             +  g+  + +l++ ++r+
  SapurV1A.0162s0420.1.p 195 RGvGEtGKHRLFIDWRRR 212
                             665777889999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-42100219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-30105213IPR015300DNA-binding pseudobarrel domain
CDDcd100178.70E-26106207No hitNo description
PfamPF023621.1E-28108212IPR003340B3 DNA binding domain
SMARTSM010198.0E-22108213IPR003340B3 DNA binding domain
PROSITE profilePS5086314.649108213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNFVGGERGY FDKEEPEEEE AMSSKLPFAS TCTSSSSSKY QNFLPENQNL WPRLSDHPQQ  60
DRETQEPSLN FDKKLEFMEL SLGTTNESES SSTDAGASDQ SIEREHMFDK VVTPSDVGKL  120
NRLVIPKQHA ERYFPLDSSS NEKGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV  180
KEKRLYAGDI VSFQRGVGET GKHRLFIDWR RRPNAPDPTS FSHLDLQNQL YYPHSVRWGR  240
LYSLPQSNLP MQQPQLQHLN YNTHPYQQNQ PHNLQYRSHQ PSTISYDNAA QYYFRPPAST  300
LPIGAVHQQG VSHVPVVIDS VPVVHGKTVG KRLRLFGVNM ECPTQNDPSS SDTMIGHGTL  360
DSSLSQSLAS SSLPPPLQVR ESTGAPMQAE FSKKGKTSLS FDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-651032153116B3 domain-containing transcription factor NGA1
5os9_B1e-651032153116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0162s0420.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039544.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_011039552.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827993e-81NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5GT980.0U5GT98_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-78B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]