PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0159s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 315aa    MW: 33845.8 Da    PI: 6.8036
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0159s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.3e-31111164155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  SapurV1A.0159s0180.1.p 111 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 164
                             59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.298108167IPR017930Myb domain
SuperFamilySSF466893.58E-20108168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-31110169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24112164IPR006447Myb domain, plants
PfamPF002492.1E-8114163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MREDDSNWFS RWEEELPSLE ELMPLSQTLI TPDLALAFDI ANPSNTTTTN NHNSSLHQNQ  60
PLPPPPPPPA AVSPTPTNPL ASPQPNSGDF GVDSSELGSG AAGDEPRTLK RPRLVWTPQL  120
HKRFVDAVAH LGIKNAVPKT IMQLMNVDGL TRENVASHLQ KYRLYLKRMQ GLSSGGGGGT  180
GGGGGLTGGT DAATDHLFAS SPVPAHFLHP GRSNSDHFLP FVPVAALQHH HHQQQMAAVG  240
HPQLPGQYHR QMGHFGSPTN GQFEHPFLPR QTQQPVHRMG APVPNTVPGY VEDLESVNGN  300
GGRKVLTLFP TGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-33111167157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0159s0180.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134140.0AC213414.1 Populus trichocarpa clone POP015-I11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460441.11e-168transcription factor MYBC1
SwissprotO222101e-63MYBC1_ARATH; Transcription factor MYBC1
TrEMBLB9H8R81e-167B9H8R8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03340.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-92G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]