PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0155s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 1115aa MW: 121426 Da PI: 8.5883 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.4 | 8.5e-07 | 65 | 121 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F + +s++e +e++++ g t +qV+ +F +R++ +k SapurV1A.0155s0080.1.p 65 KRPRDLINPKAVKYMQEVFSIKDAISKKESREISAQFGATVTQVRDFFASQRMRVRK 121 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.896 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-4 | 64 | 126 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-6 | 65 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.30E-5 | 65 | 121 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-6 | 65 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF47676 | 4.84E-6 | 320 | 412 | IPR017923 | Transcription factor IIS, N-terminal |
Gene3D | G3DSA:1.20.930.10 | 1.5E-4 | 320 | 412 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1115 aa Download sequence Send to blast |
MEDLTVTEIG SSVESFQKFL DSQRELFHNQ IDHLQRIVVT QCKLTGVNPL SQEMAAGALS 60 IQIGKRPRDL INPKAVKYMQ EVFSIKDAIS KKESREISAQ FGATVTQVRD FFASQRMRVR 120 KLVRLSREKA IRVNAHKGPQ DGVPTTTDAS MPTDLAPLNS VDQNPVSMNT VSPNPAPLNA 180 AIPNPFYLNS VAPNPVPFSF VSCNSAPLIA ASPTPSPLNS ARPDPVPLIS FSPNPAPLNP 240 ASLNPVPLDS VALDPVPLNA VGPSRVDEAP SCSTQDDVLP GLDELDKHFA EKIFDLLRKE 300 ETFSGQVKLM EWILQIQTPA VLNWFLVKGG VMILATWLSQ AAAEEQTSVL LVTLKVFCHL 360 PLHKAPPEHM SAVLHSVNGL RFYRTSDISN RARVLLSKWS KMFAKSQAIK KPNCVKSSTD 420 AQDMILKQSI DEIMANESWQ SDIGNPDGVL ALSFESSENI RKIESSQTLK LLPASTDDMS 480 RKQILGASSS YTRERRKVQL VEQPGQKTAG RSPQATKASP VNQGRPMSAD DIQKAKMRAL 540 FMQNKHGKLG SSSNGSTGLK NGGLNKPSSM TTSLCPVSKI HIRPKIEEYI KPVTPPTQVS 600 SKAEGSLDLK KEINSKGPMG GVCSKVQIPW QTPPEIKLDT LWRVGTGENS KEVDVQKNRN 660 RREIETIYQT VQKIPSNPKE PWDLEMDYDD TLTPEIPIEQ PPDADVAETQ VSHTEHVNTV 720 VASAPSLPQV GGGSATEPDL ELLAVLLKNP ELVFALTSGQ AGNLSSEETV KLLDMIKTGG 780 GLAGSLNGLG GKVEEKVEVS LPSPTPSSNN PGTSGWRSEV AKNPFSQQAS MGNRVVYSDP 840 GVPTSVPLAE QHTSLVQHQN QATSIRILQQ QASFPLQSQH VSAVMNPFSL PQTSSIGRDN 900 RQPSIALPAN QSYPSNSSLL QTLSSEMVST MKILPAPSLN LSAAMNNIKS TPSVSFTSNP 960 ERQPFPFPPS SALPTPTQLQ SQPAQINDPL IVYSSRPHAG DAGPVADSWR ARQGLASNSP 1020 SQANQINYVS SSGRPVQPSL QSGPPWERNE YVGDEGYESW SPESRRNESQ EHMPGRNYSG 1080 TRSRTNSGWD YNRSRQRNSS GHGDRNWNGN RRWH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0155s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011009535.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS-like | ||||
Swissprot | Q38796 | 1e-176 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A2K1R933 | 0.0 | A0A2K1R933_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s12730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-166 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0155s0080.1.p |
Publications ? help Back to Top | |||
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