PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0154s0240.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 845aa MW: 96636.9 Da PI: 7.2901

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0154s0240.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.9	2.7e-26	86	187	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgk 75 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ ++r+ ++t+Cka+++vk++ dgk SapurV1A.0154s0240.6.p 86 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprsrqtkqdPENGTSRRSCSKTDCKASMHVKRRPDGK 172 5*****************************************9999999998877766666679999************** PP FAR1 76 wevtkleleHnHela 90 w+++++ +eHnH l SapurV1A.0154s0240.6.p 173 WVIHSFMKEHNHGLL 187 **********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-24	86	188	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-28	286	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.186	566	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	577	604	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.0E-4	578	601	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MDIDLRLPSG DHDKEGEEPN GGDNMSSEVK LHNGNAETGS VVDVAEEILS IEGGDVNSPT 60 PATFKEDTNL EPLSGMEFES HGAAYSFYQE YARSMGFNTA IQNSRRSKTS REFIDAKFAC 120 SRYGTKREYD KSFNRPRSRQ TKQDPENGTS RRSCSKTDCK ASMHVKRRPD GKWVIHSFMK 180 EHNHGLLPAQ AVSEQTRKMY AAMAQQFAEY KNVAGLKNDP KNPFDKGRSL GLEAGETKIL 240 LDFFTKMQNI NSNFFYAVDL GEDQCLKNLF WVDAKSRHDY SNFSDVVSFD TTYVRNKYKM 300 PLALFVGVNQ HYQFMLLGCA LISDESAATY SWLMQTWLRA MGGQTPKVII TDQDKVVKQV 360 ISEVFPIAHH CFFLWNILGK VSENLGNLVK QNENFMAKFD KCIFRSWTEN EFGKRWWKIL 420 DRFELRENEW MQSLYEDREQ WVPIYLRGAF LAGMSTILRS ESTNSYFDKY VHKKTSVQEF 480 VRQYEPILQD RYEEEAKADS DTWNKQPALK SPSPLEKSVS GMYTHAVFKK FQVEVLGVVA 540 CHPKMEFQDE ISVNFRVQDL EKQQDFTVLW NQIRLEVSCI CRLYEYKGFL CRHALVVLQM 600 CQQSAIPSQY ILKRWTKDAK SKHLIGEESE KVQSRVQRYN DLCQLALKLS EEASLSQESY 660 NIAFRSIGEV FGNCISMNNS NKSLVEAVTS TTHGLLCIED DNQNRSMTKT NKKKNQTKKR 720 KVNSEQEITT VGPQDSLQQM EKLSSRAVAL EGYYGTQQGV PGMVQLNLMA PTRDNYYSNQ 780 QTIQGLGQLN SIAPSHDGYY STQQSMHGLG QMDFFRAPTA FAYGIRDDPN VRTAPLHDDG 840 SRHA*

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MDIDLRLPSG DHDKEGEEPN GGDNMSSEVK LHNGNAETGS VVDVAEEILS IEGGDVNSPT  60
PATFKEDTNL EPLSGMEFES HGAAYSFYQE YARSMGFNTA IQNSRRSKTS REFIDAKFAC  120
SRYGTKREYD KSFNRPRSRQ TKQDPENGTS RRSCSKTDCK ASMHVKRRPD GKWVIHSFMK  180
EHNHGLLPAQ AVSEQTRKMY AAMAQQFAEY KNVAGLKNDP KNPFDKGRSL GLEAGETKIL  240
LDFFTKMQNI NSNFFYAVDL GEDQCLKNLF WVDAKSRHDY SNFSDVVSFD TTYVRNKYKM  300
PLALFVGVNQ HYQFMLLGCA LISDESAATY SWLMQTWLRA MGGQTPKVII TDQDKVVKQV  360
ISEVFPIAHH CFFLWNILGK VSENLGNLVK QNENFMAKFD KCIFRSWTEN EFGKRWWKIL  420
DRFELRENEW MQSLYEDREQ WVPIYLRGAF LAGMSTILRS ESTNSYFDKY VHKKTSVQEF  480
VRQYEPILQD RYEEEAKADS DTWNKQPALK SPSPLEKSVS GMYTHAVFKK FQVEVLGVVA  540
CHPKMEFQDE ISVNFRVQDL EKQQDFTVLW NQIRLEVSCI CRLYEYKGFL CRHALVVLQM  600
CQQSAIPSQY ILKRWTKDAK SKHLIGEESE KVQSRVQRYN DLCQLALKLS EEASLSQESY  660
NIAFRSIGEV FGNCISMNNS NKSLVEAVTS TTHGLLCIED DNQNRSMTKT NKKKNQTKKR  720
KVNSEQEITT VGPQDSLQQM EKLSSRAVAL EGYYGTQQGV PGMVQLNLMA PTRDNYYSNQ  780
QTIQGLGQLN SIAPSHDGYY STQQSMHGLG QMDFFRAPTA FAYGIRDDPN VRTAPLHDDG  840
SRHA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0154s0240.6.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002323176.2	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Refseq	XP_011001059.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X4
Refseq	XP_024443449.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Refseq	XP_024443450.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A2K1X9A3	0.0	A0A2K1X9A3_POPTR; Uncharacterized protein
STRING	POPTR_0016s01980.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0154s0240.6.p

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]