PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0154s0240.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 846aa MW: 96765 Da PI: 7.2901 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.9 | 2.7e-26 | 86 | 187 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgk 75 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e+ ++r+ ++t+Cka+++vk++ dgk SapurV1A.0154s0240.5.p 86 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprsrqtkqdPENGTSRRSCSKTDCKASMHVKRRPDGK 172 5*******************************************9999999998877766666679999****************** PP FAR1 76 wevtkleleHnHela 90 w+++++ +eHnH l SapurV1A.0154s0240.5.p 173 WVIHSFMKEHNHGLL 187 ************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-24 | 86 | 188 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.1E-28 | 286 | 377 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 566 | 602 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-7 | 577 | 604 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 1.0E-4 | 578 | 601 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MDIDLRLPSG DHDKEGEEPN GGDNMSSEVK LHNGNAETGS VVDVAEEILS IEGGDVNSPT 60 PATFKEDTNL EPLSGMEFES HGAAYSFYQE YARSMGFNTA IQNSRRSKTS REFIDAKFAC 120 SRYGTKREYD KSFNRPRSRQ TKQDPENGTS RRSCSKTDCK ASMHVKRRPD GKWVIHSFMK 180 EHNHGLLPAQ AVSEQTRKMY AAMAQQFAEY KNVAGLKNDP KNPFDKGRSL GLEAGETKIL 240 LDFFTKMQNI NSNFFYAVDL GEDQCLKNLF WVDAKSRHDY SNFSDVVSFD TTYVRNKYKM 300 PLALFVGVNQ HYQFMLLGCA LISDESAATY SWLMQTWLRA MGGQTPKVII TDQDKVVKQV 360 ISEVFPIAHH CFFLWNILGK VSENLGNLVK QNENFMAKFD KCIFRSWTEN EFGKRWWKIL 420 DRFELRENEW MQSLYEDREQ WVPIYLRGAF LAGMSTILRS ESTNSYFDKY VHKKTSVQEF 480 VRQYEPILQD RYEEEAKADS DTWNKQPALK SPSPLEKSVS GMYTHAVFKK FQVEVLGVVA 540 CHPKMEFQDE ISVNFRVQDL EKQQDFTVLW NQIRLEVSCI CRLYEYKGFL CRHALVVLQM 600 CQQSAIPSQY ILKRWTKDAK SKHLIGEESE KVQSRVQRYN DLCQLALKLS EEASLSQESY 660 NIAFRSIGEV FGNCISMNNS NKSLVEAVTS TTHGLLCIED DNQNRSMTKT NKKKNQTKKR 720 KVNSEQEITT VGPQDSLQQM EKLSSRAVAL EGYYGTQQGV PGMVQLNLMA PTRDNYYSNQ 780 QTIQGLGQLN SIAPSHDGYY STQQSMHGLG QMDFFRAPTA FAYGIRQDDP NVRTAPLHDD 840 GSRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0154s0240.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001058.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A2K1X9A7 | 0.0 | A0A2K1X9A7_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A385JIP4 | 0.0 | A0A385JIP4_POPTO; Far-red elongated hypocotyls 3 | ||||
STRING | POPTR_0016s01980.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0154s0240.5.p |