PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0153s0580.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35427.7 Da PI: 8.1865 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 164 | 223 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh+ SapurV1A.0153s0580.1.p 164 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSIDDQSVLVATYEGEHNHP 223 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.9E-29 | 155 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-25 | 161 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-34 | 164 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-25 | 165 | 223 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.073 | 166 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MDYSSWVDTS LDLNISSIRV KSEAPVEAER SGMAKELKPT FMDFQTKPSS KEETGALVEE 60 LNRVGEENRK LTEMLTVMCE SYNALRGQLM DYMSKIGEKD RLAPSKKRKS ESSHNNNNNI 120 AMNGNSESSS TDEESSKKPR EEIIKDKISK AYVRTEAGDT SLTVKDGYQW RKYGQKVTRD 180 NPCPRAYFKC SFAPSCPVKK KVQRSIDDQS VLVATYEGEH NHPHPSMEAA PGSNRSLTLG 240 SVPCTASLAS SGPTITLDLT KPKSSNDDKS SKPRTDTPEV QKFLVEQMAS SLTKDPNFTA 300 ALVAAISGRM FQQNNSEKW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-18 | 166 | 226 | 19 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 1e-18 | 164 | 225 | 14 | 74 | WRKY transcription factor 1 |
2lex_A | 1e-18 | 166 | 226 | 19 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0153s0580.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147787 | 0.0 | EF147787.1 Populus trichocarpa clone WS0125_A17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020606.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-108 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A9PHD6 | 0.0 | A9PHD6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s18060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-97 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0153s0580.1.p |