PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0152s0370.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 723aa MW: 81021.7 Da PI: 7.2104

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0152s0370.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117.8	5.3e-37	129	205	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k SapurV1A.0152s0370.1.p 129 RCQVPSCEADISELKGYHRRHRVCLGCANATAVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 205 6************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.2E-28	125	191	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.368	127	204	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.19E-33	128	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-27	130	204	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
METSSSSSPP QPQHDGNMEF HRPPVTNEWD WGDLLDFTVD EQFPLSFDTV VDVTQPIDNP 60 TPEVESQQFE VPDSDRVRKR DPRLTCSNFL AGIIPCACPE MDELLLEEEA AQPEKKRARV 120 ARAGSIIARC QVPSCEADIS ELKGYHRRHR VCLGCANATA VVLDGETKRY CQQCGKFHVL 180 SDFDEGKRSC RRKLERHNNR RRRKPADSSK GSADGLCSSS QMVEKEGLVE SEDGHISALN 240 SDPLSQNVNS DSGVSFTASG DTRMDCRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE 300 GYIRPGCTIL TVFLAMPTFM WVKLLEDPES YLNDLLGSGK MLSKKGRMCV YLNNMIFNVT 360 KDGNSVMKVN VKGHAPRLHY VHPTCFEAGK PIELVVCGSN LLQTKFRFLV SFAGKYLAHD 420 SCVALPQEYT KGATGLHHQL YKILTHCIEP NLSGPLFIEV ENESGLSNFI PVLIGDREVC 480 SEMKIIQQRF DASRSLIIGS ECEVSTMRQT AFSEFSMDIA WLLKEPSAEN SQQTMTSFQI 540 QRVNSLLNFL LHHESIIILD KILKNLKIRT DKREVNGMVN TRLLQSYMDC ASSILHKKLE 600 RSEVLKHHLE CPGQENCVSG SCCDLEQRPN GGSGVTANTE SIVRSGVVPL LNRDADTRPN 660 PINETPKKSC GLVFSNRVLK NRPSVFVIAM IAVCFGACAI LLHPQKVSKL AVSIRRCLTD 720 RY*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

METSSSSSPP QPQHDGNMEF HRPPVTNEWD WGDLLDFTVD EQFPLSFDTV VDVTQPIDNP  60
TPEVESQQFE VPDSDRVRKR DPRLTCSNFL AGIIPCACPE MDELLLEEEA AQPEKKRARV  120
ARAGSIIARC QVPSCEADIS ELKGYHRRHR VCLGCANATA VVLDGETKRY CQQCGKFHVL  180
SDFDEGKRSC RRKLERHNNR RRRKPADSSK GSADGLCSSS QMVEKEGLVE SEDGHISALN  240
SDPLSQNVNS DSGVSFTASG DTRMDCRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE  300
GYIRPGCTIL TVFLAMPTFM WVKLLEDPES YLNDLLGSGK MLSKKGRMCV YLNNMIFNVT  360
KDGNSVMKVN VKGHAPRLHY VHPTCFEAGK PIELVVCGSN LLQTKFRFLV SFAGKYLAHD  420
SCVALPQEYT KGATGLHHQL YKILTHCIEP NLSGPLFIEV ENESGLSNFI PVLIGDREVC  480
SEMKIIQQRF DASRSLIIGS ECEVSTMRQT AFSEFSMDIA WLLKEPSAEN SQQTMTSFQI  540
QRVNSLLNFL LHHESIIILD KILKNLKIRT DKREVNGMVN TRLLQSYMDC ASSILHKKLE  600
RSEVLKHHLE CPGQENCVSG SCCDLEQRPN GGSGVTANTE SIVRSGVVPL LNRDADTRPN  660
PINETPKKSC GLVFSNRVLK NRPSVFVIAM IAVCFGACAI LLHPQKVSKL AVSIRRCLTD  720
RY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	1e-42	127	209	3	85	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	202	RRKLERHNNRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269\|PubMed:19122104, ECO:0000269\|PubMed:22374396, ECO:0000269\|PubMed:25516599, ECO:0000269\|PubMed:26511915, ECO:0000269\|PubMed:27352843}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0152s0370.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT029897	1e-145	CT029897.1 Poplar cDNA sequences.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011011019.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q8S9G8	0.0	SPL7_ARATH; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2K1YMU5	0.0	A0A2K1YMU5_POPTR; Uncharacterized protein
STRING	POPTR_0010s02710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6470	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	squamosa promoter binding protein-like 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0152s0370.1.p

Publications ? help Back to Top
Zhang H, et al. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. Plant Cell, 2014. 26(12): p. 4933-53 [PMID:25516599] Zhao Y, et al. MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis. Plant Physiol., 2015. 169(4): p. 2539-52 [PMID:26511915] Perea-García A, et al. Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(1): p. 391-403 [PMID:26516126] Gielen H,Remans T,Vangronsveld J,Cuypers A Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7. BMC Plant Biol., 2016. 16(1): p. 145 [PMID:27352843] Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014] Araki R, et al. SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. J. Plant Physiol., 2018. [PMID:29635212]