PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0152s0170.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1094aa MW: 122053 Da PI: 8.7854

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0152s0170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	44	75	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 W +eE e++++a +++G++ W+++a ++ R+ SapurV1A.0152s0170.1.p 44 QWGKEELERFYKAYRKHGKD-WEKVAVVVN--RSV 75 6***************99.***9886..665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.0E-7	41	88	IPR009057	Homeodomain-like
SMART	SM00717	7.7E-4	41	88	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-6	44	78	IPR001005	SANT/Myb domain
CDD	cd00167	2.96E-4	45	86	No hit	No description
Pfam	PF06584	2.4E-31	557	657	IPR033471	DIRP domain
SMART	SM01135	4.5E-52	557	658	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence Send to blast
MAPSTKRNKR YSNIDEVTSN KNAAEIANKS KPRKRKLSEM LGPQWGKEEL ERFYKAYRKH 60 GKDWEKVAVV VNRSVEMVEA LYTMNKAYLS LPKGFASGAG LIAMMTDHYS NLGESGSELE 120 SSGGKRPSQK PQKRARVTKG SAAPPVLDLL LSQPAASNYG CLSLFKKRHS GSKPWTVGKR 180 TPRVPVTYSH DKDNEKYVSP IWQGMKVKAD AVDDDVAHEI ALALTEASRR DYARDRIFWK 240 GRRYHGRRSL EVEENLDNHL DDVREACSGT EEGQKLEAFK EKFEMEVAYS KPVRSSKGSR 300 KRSKKVLFGE VEDTDFDALE ALADLSLRLP ETPVDTGLSA LVEEENTRIV AKSKLKRIRS 360 SPGVKPVSFK NIRHGKVSPH NVTSIPEAEE APYQISPVMR KRRQKPSPSK ISENEKHADS 420 HLGESQKFEV TKDDNFVSKG KYSLDAAYFK EGKLMKPAEQ ISSSNNHGRE LNDSAPTTIR 480 VLSANQFNLL TKVRSSRKLN IPKLLVERDS KSSENIVNSK SNTVIPSFQD RVLSLKGKLS 540 NCLSRYLVRR WCLFEWFASA IDYPWFAKRE FVEYLEHVGL GHIPRLTRVE WGVIRSSLGK 600 PRRFSEQFLK EEKKKLNQYR ESVREHYAEL HAGTRDGLPT DLARPLSVGQ RILALHPRTS 660 EIHDGSILTV DHSRYCVQFD QPELGVEFVM DVHCMPLNPL ENMPASMIGH NIALNRYIKN 720 LNELKINVQP AEKKMEEFNF SPCENLEGAS ALPHGTPSTY PFSDLLQHPK GGLLGSNTQF 780 NIGGETVNTQ QATNAQPSFC AQIQAKEGDI HALSELSRAL DKKEAVVSEL KHMNDEVLES 840 QKRHYAAVLL QLNEVNELVS SALFCLRERN TYQGNTPHVL SKPVANIDEP ACHSSSFDSS 900 TDDTQESGSH VVEIVESSRT KAQTMVDAAM QAMLSLKKEG SSIDSIEDAI DSVNNKLSAD 960 DLSVPAIRSS IPAISIQGTL AFQDQSSSRA ANPGAINHEP DAKLNNLSTP NEVQIPTELI 1020 SHCVATLLMI KASIRICNIR CTERQFPLSD VAMVLDSAVT SLKPCCSTNL PIYAEIQKCM 1080 GVIRNQILAL IPT*

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence Send to blast

MAPSTKRNKR YSNIDEVTSN KNAAEIANKS KPRKRKLSEM LGPQWGKEEL ERFYKAYRKH  60
GKDWEKVAVV VNRSVEMVEA LYTMNKAYLS LPKGFASGAG LIAMMTDHYS NLGESGSELE  120
SSGGKRPSQK PQKRARVTKG SAAPPVLDLL LSQPAASNYG CLSLFKKRHS GSKPWTVGKR  180
TPRVPVTYSH DKDNEKYVSP IWQGMKVKAD AVDDDVAHEI ALALTEASRR DYARDRIFWK  240
GRRYHGRRSL EVEENLDNHL DDVREACSGT EEGQKLEAFK EKFEMEVAYS KPVRSSKGSR  300
KRSKKVLFGE VEDTDFDALE ALADLSLRLP ETPVDTGLSA LVEEENTRIV AKSKLKRIRS  360
SPGVKPVSFK NIRHGKVSPH NVTSIPEAEE APYQISPVMR KRRQKPSPSK ISENEKHADS  420
HLGESQKFEV TKDDNFVSKG KYSLDAAYFK EGKLMKPAEQ ISSSNNHGRE LNDSAPTTIR  480
VLSANQFNLL TKVRSSRKLN IPKLLVERDS KSSENIVNSK SNTVIPSFQD RVLSLKGKLS  540
NCLSRYLVRR WCLFEWFASA IDYPWFAKRE FVEYLEHVGL GHIPRLTRVE WGVIRSSLGK  600
PRRFSEQFLK EEKKKLNQYR ESVREHYAEL HAGTRDGLPT DLARPLSVGQ RILALHPRTS  660
EIHDGSILTV DHSRYCVQFD QPELGVEFVM DVHCMPLNPL ENMPASMIGH NIALNRYIKN  720
LNELKINVQP AEKKMEEFNF SPCENLEGAS ALPHGTPSTY PFSDLLQHPK GGLLGSNTQF  780
NIGGETVNTQ QATNAQPSFC AQIQAKEGDI HALSELSRAL DKKEAVVSEL KHMNDEVLES  840
QKRHYAAVLL QLNEVNELVS SALFCLRERN TYQGNTPHVL SKPVANIDEP ACHSSSFDSS  900
TDDTQESGSH VVEIVESSRT KAQTMVDAAM QAMLSLKKEG SSIDSIEDAI DSVNNKLSAD  960
DLSVPAIRSS IPAISIQGTL AFQDQSSSRA ANPGAINHEP DAKLNNLSTP NEVQIPTELI  1020
SHCVATLLMI KASIRICNIR CTERQFPLSD VAMVLDSAVT SLKPCCSTNL PIYAEIQKCM  1080
GVIRNQILAL IPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	PRKRKL
2	398	403	MRKRRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0152s0170.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044502.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A3N7FL22	0.0	A0A3N7FL22_POPTR; Uncharacterized protein
STRING	cassava4.1_000519m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	SapurV1A.0152s0170.1.p

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]