PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0152s0130.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 474aa MW: 50387.3 Da PI: 8.688 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 45 | 68 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG C yG++C+++H++ SapurV1A.0152s0130.6.p 45 QDCPYYLRTGLCGYGASCRYNHPR 68 68********************96 PP | |||||||
2 | zf-CCCH | 42.1 | 1.4e-13 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtGtCk+G++Ck++H++ SapurV1A.0152s0130.6.p 90 QPLCQYYMRTGTCKFGASCKYNHPK 114 79*********************96 PP | |||||||
3 | zf-CCCH | 35.8 | 1.3e-11 | 135 | 160 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ SapurV1A.0152s0130.6.p 135 GERECTYYIKTGQCKFGATCKFHHPQ 160 5799********************97 PP | |||||||
4 | zf-CCCH | 33.4 | 7.9e-11 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+ ++Ck++H+p SapurV1A.0152s0130.6.p 296 PGQPDCQYYMKTGDCKFRSSCKYHHPP 322 5789*********************97 PP | |||||||
5 | zf-CCCH | 30.7 | 5.4e-10 | 343 | 368 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C ++ + G+Ck+G+ CkF H++ SapurV1A.0152s0130.6.p 343 GVPACTHYTQRGQCKFGPACKFDHPM 368 7899********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.652 | 41 | 69 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-8 | 44 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-7 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 89 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.6E-11 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-6 | 92 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-4 | 133 | 160 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 135 | 161 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 135 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 295 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 297 | 322 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-5 | 300 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 301 | 322 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 341 | 368 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 341 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-8 | 343 | 368 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 345 | 371 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 347 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MDRYGRAQEG SQSDPAIEWT GSGQESGLEG LGETESEYPE RPNEQDCPYY LRTGLCGYGA 60 SCRYNHPRDR TVVLRTVRTS GVEFPERVGQ PLCQYYMRTG TCKFGASCKY NHPKQGGSSI 120 SPVSLNYYGY PLRLGERECT YYIKTGQCKF GATCKFHHPQ PGNMQIPAQS LAPQVASVPA 180 HTLYPTMQSL SVPSPQQYGL MFGRPPLLPG SYVQGPFGHV LLSPSLVPYP SWSPYPAPVS 240 PVASPNTQPA VGSGSVYGIS PLSPSAPAYT GAYQSIPTAK GPSSSSQKEH LFPERPGQPD 300 CQYYMKTGDC KFRSSCKYHH PPELVASKTN VVLSPMGLPL RPGVPACTHY TQRGQCKFGP 360 ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSDLRSKP SKDSSSTRLS 420 SSTSTPSGSV GSIYSKSPVS HSSVQQSGRS SSPSTSTSTS TSTSTSTGAC TSC* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0152s0130.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC182669 | 1e-109 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013662.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-158 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | B9HSD6 | 0.0 | B9HSD6_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_006608m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-134 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0152s0130.6.p |
Publications ? help Back to Top | |||
---|---|---|---|
|