PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0152s0130.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 480aa MW: 51148.1 Da PI: 8.6096 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 51 | 74 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C++++rtG C yG++C+++H++ SapurV1A.0152s0130.1.p 51 QDCPYYLRTGLCGYGASCRYNHPR 74 68********************96 PP | |||||||
2 | zf-CCCH | 42.1 | 1.5e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtGtCk+G++Ck++H++ SapurV1A.0152s0130.1.p 96 QPLCQYYMRTGTCKFGASCKYNHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 35.8 | 1.4e-11 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ SapurV1A.0152s0130.1.p 141 GERECTYYIKTGQCKFGATCKFHHPQ 166 5799********************97 PP | |||||||
4 | zf-CCCH | 33.3 | 8e-11 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+ ++Ck++H+p SapurV1A.0152s0130.1.p 302 PGQPDCQYYMKTGDCKFRSSCKYHHPP 328 5789*********************97 PP | |||||||
5 | zf-CCCH | 30.7 | 5.5e-10 | 349 | 374 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C ++ + G+Ck+G+ CkF H++ SapurV1A.0152s0130.1.p 349 GVPACTHYTQRGQCKFGPACKFDHPM 374 7899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.652 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-8 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.032 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-11 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-6 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.9E-4 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.305 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-8 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.821 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.4E-5 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 303 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-5 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-4 | 307 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-6 | 347 | 374 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 347 | 375 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-8 | 349 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 351 | 377 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-4 | 353 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MDRYGRAQEG SQSDPAIEWT GSGQESGLEE GFWQLGLGET ESEYPERPNE QDCPYYLRTG 60 LCGYGASCRY NHPRDRTVVL RTVRTSGVEF PERVGQPLCQ YYMRTGTCKF GASCKYNHPK 120 QGGSSISPVS LNYYGYPLRL GERECTYYIK TGQCKFGATC KFHHPQPGNM QIPAQSLAPQ 180 VASVPAHTLY PTMQSLSVPS PQQYGLMFGR PPLLPGSYVQ GPFGHVLLSP SLVPYPSWSP 240 YPAPVSPVAS PNTQPAVGSG SVYGISPLSP SAPAYTGAYQ SIPTAKGPSS SSQKEHLFPE 300 RPGQPDCQYY MKTGDCKFRS SCKYHHPPEL VASKTNVVLS PMGLPLRPGV PACTHYTQRG 360 QCKFGPACKF DHPMGTLSYS PSASSLADMP VAPYPVGSSI GTLAPSSSSS DLRSKPSKDS 420 SSTRLSSSTS TPSGSVGSIY SKSPVSHSSV QQSGRSSSPS TSTSTSTSTS TSTGACTSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0152s0130.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182669 | 1e-109 | AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013662.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q84W91 | 1e-160 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | B9HSD6 | 0.0 | B9HSD6_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_006608m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-141 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0152s0130.1.p |