PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0090.20.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 1073aa    MW: 117382 Da    PI: 4.6465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0090.20.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.71.7e-10916958246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
  SapurV1A.0152s0090.20.p 916 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 958
                              59*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.4E-27908990No hitNo description
PROSITE profilePS5129310.733913964IPR017884SANT domain
Gene3DG3DSA:1.10.10.604.7E-6913958IPR009057Homeodomain-like
SMARTSM007171.7E-7914962IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-10916965IPR009057Homeodomain-like
CDDcd001671.82E-6917958No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MDPDLDPFDD ILPKPTLTNA RSAGKFQPKA KPRPKKVEFV PIPSIPPSKA KEKAVAASQT  60
SLDTAISVQP VGIMDEKLTG QIGSLSPSAP TGTKEPLKSN DGKTKLVEES GSPLATSDMV  120
GVKEPQKYKE GLPSWEIGSL EAANLTPVRG NDAGSVGAVD SEADCNGNQK YNFVKSAGAA  180
GSLGFDSDLL DDIIPKSLKT RAGGKFKPKV KPWQRNENPE PVSSSPSKCA EEEPKAHSQK  240
TQSTEPVYVA NTRMNPIGRT LLQQGNVESN EPSKDSEVLY LNSKSCLELV NPSSDNIATE  300
EFVCTHNTQL SEMKSGNDVG LNSRFVESAI EVGSMRLDLD AFDYTDPQLA ISIGRAADKL  360
QSKVKACPRK GTSELAASAV PVVEKVAGLT STVLDNTPPT ESSGAENGRL THLVCEPLME  420
SARTKEPGRN NSKALLSPPE MLATVSCEKD PKGKSSFPVK NFFDSSASIK YDVVATNFIS  480
SNEAAVQVDN GRLELEESGA FPGLETPGFL SPDVMESVMA PPTDVQHVPS ETINIEGSSV  540
GAFPSDNIVD SLSTHPEDAS DLPEKETSSS RKRKDAPASY SSWKSQKASL AGDMNEHDRS  600
TRHPRKQVAA PQLGDEPEDE GHGNGGLPLE NIDDDSSMHS SNFIPVDPCT LEAQVDQNQK  660
YFTESNCLAN ANVVHSEDVP VVPGKESSKS GKRKVFSASN CSRKSKKSSL AAGTQVVDEL  720
DEAQDNGGLP AEPPGSSVDE EDNDSEPGGD EERDDENRVQ IASRKKRASK KSKEPVTEKE  780
KQVRKCNRSN DTPEQPMQEP RKKFSHSTRR NKRCVKKDLL DMPEDEIDFK RLPIRDIILF  840
AEYKERLSVK EATTSKIPPN NQSSDNPFHG GYSHYEEDEF ASEQDKTHDD DQTYVRAQPS  900
SSLFNHQSFT DRAPNSRWSK QDTELFYEGI QQFGTDLSMI QQLFPGRTRH QVKLKYKKEE  960
RQNPLRLHEA LSRRPKDNSY FEKLIEQLQE VAAIREEQES YKDDLVDVSG EEDAELNAEN  1020
NDEVTKPKQD EDVGVEEDQE ENVVAEDHHG PQKSGVSDED VGDIWGSYGS EF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1692706RKVFSASNCSRKSKK
2765773KRASKKSKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0090.20.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142131e-170AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466756.10.0uncharacterized protein LOC7475967 isoform X6
TrEMBLA0A2K1YMI70.0A0A2K1YMI7_POPTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-46MYB_related family protein