PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0152s0090.11.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 1104aa MW: 120853 Da PI: 4.5924

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0152s0090.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.7	1.8e-10	947	989	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k SapurV1A.0152s0090.11.p 947 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 989 59*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	1.5E-27	939	1021	No hit	No description
PROSITE profile	PS51293	10.733	944	995	IPR017884	SANT domain
Gene3D	G3DSA:1.10.10.60	4.8E-6	944	989	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-7	945	993	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.17E-10	947	996	IPR009057	Homeodomain-like
CDD	cd00167	1.88E-6	948	989	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1104 aa Download sequence Send to blast
MDPDLDPFDD ILPKPTLTNA RSAGKFQPKA KPRPKKVEFV PIPSIPPSKA KEKAVAASQT 60 SLDTAISVQP VGIMDEKLTG QIGSLSPSAP TGTKEPLKSN DGKTKLVEES GSPLATSDMV 120 GVKEPQKYKE GLPSWEIGSL EAANLTPVRG NDAGSVGAVD SEADCNGNQK YNFVKSAGAA 180 GSLGFDSDLL DDIIPKSLKT RAGGKFKPKV KPWQRNENPE PVSSSPSKCA EEEPKAHSQK 240 TQSTEPVYVA NTRMNPIGRT LLQQGNVESN EPSKDSEVLY LNSKSCLELV NPSSDNIATE 300 EFVCTHNTQL SEMKSGNDVG LNSRFVESAI EVGSMRLDLD AFDYTDPQLA ISIGRAADKL 360 QSKVKACPRK GTSELAASAV PVVEKVAGLT STVLDNTPPT ESSGAENGRL THLVCEPLME 420 SARTKEPGRN NSKALLSPPE MLATVSCEKD PKGKSSFPVK NFFDSSASIK YDVVATNFIS 480 SNEAAVQVDN GRLELEESGA FPGLETPGFL SPDVMESVMA PPTDVQHVPS ETINIEGSSV 540 GAFPSDNIVD SLSTHPGDFI PPDTCTSEIQ MNQELENLTE TNVTGIHQED ASDLPEKETS 600 SSRKRKDAPA SYSSWKSQKA SLAGDMNEHD RSTRHPRKQV AAPQLGDEPE DEGHGNGGLP 660 LENIDDDSSM HSSNFIPVDP CTLEAQVDQN QKYFTESNCL ANANVVHSED VPVVPGKESS 720 KSGKRKVFSA SNCSRKSKKS SLAAGTQVVD ELDEAQDNGG LPAEPPGSSV DEEDNDSEPG 780 GDEERDDENR VQIASRKKRA SKKSKEPVTE KEKQVRKCNR SNDTPEQPMQ EPRKKFSHST 840 RRNKRCVKKD LLDMPEDEID FKRLPIRDII LFAEYKERLS VKEATTSKIP PNNQSDNPFH 900 GGYSHYEEDE FASEQDKTHD DDQTYVRAQP SSSLFNHQSF TDRAPNSRWS KQDTELFYEG 960 IQQFGTDLSM IQQLFPGRTR HQVKLKYKKE ERQNPLRLHE ALSRRPKDNS YFEKLIEQLQ 1020 EVAAIREEQE SYKDDLVDVS GEEDAELNAE NNDEVTKPKQ DEDVGVEEDQ EENVVAEDHH 1080 GPQKSGVSDE DVGDIWGSYG SEF*

Sequence ? help Back to Top

Protein Sequence Length: 1104 aa Download sequence Send to blast

MDPDLDPFDD ILPKPTLTNA RSAGKFQPKA KPRPKKVEFV PIPSIPPSKA KEKAVAASQT  60
SLDTAISVQP VGIMDEKLTG QIGSLSPSAP TGTKEPLKSN DGKTKLVEES GSPLATSDMV  120
GVKEPQKYKE GLPSWEIGSL EAANLTPVRG NDAGSVGAVD SEADCNGNQK YNFVKSAGAA  180
GSLGFDSDLL DDIIPKSLKT RAGGKFKPKV KPWQRNENPE PVSSSPSKCA EEEPKAHSQK  240
TQSTEPVYVA NTRMNPIGRT LLQQGNVESN EPSKDSEVLY LNSKSCLELV NPSSDNIATE  300
EFVCTHNTQL SEMKSGNDVG LNSRFVESAI EVGSMRLDLD AFDYTDPQLA ISIGRAADKL  360
QSKVKACPRK GTSELAASAV PVVEKVAGLT STVLDNTPPT ESSGAENGRL THLVCEPLME  420
SARTKEPGRN NSKALLSPPE MLATVSCEKD PKGKSSFPVK NFFDSSASIK YDVVATNFIS  480
SNEAAVQVDN GRLELEESGA FPGLETPGFL SPDVMESVMA PPTDVQHVPS ETINIEGSSV  540
GAFPSDNIVD SLSTHPGDFI PPDTCTSEIQ MNQELENLTE TNVTGIHQED ASDLPEKETS  600
SSRKRKDAPA SYSSWKSQKA SLAGDMNEHD RSTRHPRKQV AAPQLGDEPE DEGHGNGGLP  660
LENIDDDSSM HSSNFIPVDP CTLEAQVDQN QKYFTESNCL ANANVVHSED VPVVPGKESS  720
KSGKRKVFSA SNCSRKSKKS SLAAGTQVVD ELDEAQDNGG LPAEPPGSSV DEEDNDSEPG  780
GDEERDDENR VQIASRKKRA SKKSKEPVTE KEKQVRKCNR SNDTPEQPMQ EPRKKFSHST  840
RRNKRCVKKD LLDMPEDEID FKRLPIRDII LFAEYKERLS VKEATTSKIP PNNQSDNPFH  900
GGYSHYEEDE FASEQDKTHD DDQTYVRAQP SSSLFNHQSF TDRAPNSRWS KQDTELFYEG  960
IQQFGTDLSM IQQLFPGRTR HQVKLKYKKE ERQNPLRLHE ALSRRPKDNS YFEKLIEQLQ  1020
EVAAIREEQE SYKDDLVDVS GEEDAELNAE NNDEVTKPKQ DEDVGVEEDQ EENVVAEDHH  1080
GPQKSGVSDE DVGDIWGSYG SEF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	724	738	RKVFSASNCSRKSKK
2	797	805	KRASKKSKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0152s0090.11.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214213	1e-170	AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024466754.1	0.0	uncharacterized protein LOC7475967 isoform X4
TrEMBL	A0A2K1YMI7	0.0	A0A2K1YMI7_POPTR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	6e-47	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0152s0090.11.p