PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0151s0340.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 508aa MW: 55727.1 Da PI: 4.4975 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.2 | 3.7e-35 | 37 | 128 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d++++ ++sws+++nsfvv++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F + SapurV1A.0151s0340.1.p 37 FLSKTYDMVDDPATDAVVSWSSTNNSFVVWNLPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLR 114 9****************************************************************999.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+k+ll+ i r+k SapurV1A.0151s0340.1.p 115 GQKHLLRIISRRKP 128 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-39 | 27 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-60 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-34 | 33 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.4E-30 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-20 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-20 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 76 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.6E-20 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MDGTISSASG GDASTSGDGA QAASVPMASQ SNAPPPFLSK TYDMVDDPAT DAVVSWSSTN 60 NSFVVWNLPE FSRDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL 120 RIISRRKPAH GHANQQPQQP HGQNSSVAAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR 180 QQQQSTDSQL QTMVQRLQGM EQRQQQMMSF LAKAMQSPSL LAQFVQQQND SNRRITEANK 240 KRRLKQEDDL ENEGSSSPDG QIVKYQPLMN EAAKGMLRQI VKMDPPSKLE SYDNNLGAKD 300 GGSSSSCTSG VTLQEVLPTL GQSTHIPAAF GISKQPTTAI SEIQSSLPIA SSEKFTASQF 360 PDISMLVGDQ GTPSLPISQA DVTMPQVSQM PEMVPENISD IPDEDYMEPE TSNGGLIDPA 420 SLGIDGIIPI DIDNISPDPD IDALLDNSSF WYDLLVQSPV PEDIESRSVE GKANGNDVQP 480 NANGWDKAQH VEQLTEQMGL LTSDKKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 27 | 126 | 11 | 120 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 245 | NKKRRLKQ |
2 | 239 | 244 | KKRRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0151s0340.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF905565 | 0.0 | JF905565.1 Populus simonii clone JL heat shock transcription factor (HsfA1d) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303429.2 | 0.0 | heat shock factor protein HSF8 | ||||
Swissprot | Q40152 | 1e-165 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A0N6WKZ7 | 0.0 | A0A0N6WKZ7_9ROSI; Heat shock transcription factor A1c1 | ||||
STRING | POPTR_0003s09370.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-129 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0151s0340.1.p |
Publications ? help Back to Top | |||
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