PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 316aa    MW: 35150.4 Da    PI: 6.8574
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-321064155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprl+Wt+eLH+rFveav+qLGG ++AtPk++++lm+++gLtl+h+kSHLQkYRl
  SapurV1A.0149s0060.1.p 10 KPRLKWTQELHQRFVEAVNQLGGVDRATPKSLVRLMGIPGLTLYHLKSHLQKYRL 64
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.634767IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-30866IPR009057Homeodomain-like
SuperFamilySSF466896.27E-17965IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-221065IPR006447Myb domain, plants
PfamPF002493.0E-81263IPR001005SANT/Myb domain
PfamPF143791.4E-23116163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTQELH QRFVEAVNQL GGVDRATPKS LVRLMGIPGL TLYHLKSHLQ  60
KYRLGKSQQS LISIESKQED DRETQSSDDH FKESAVNQSS RGICSDGNHH PINESFQIAQ  120
ALQMQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLKKA QETLAGYNSS SMGIELAKAE  180
LCRLVSMVNS GCPSSSMSEL TETGGSILKD TERTQMWNTV CSMESSLTSS ESSGRKEDVQ  240
KENEIHDTNK SNTASVELPL MDIHPQENLL DNGSSNQGKK RSGSIISDGV SVEQPPARRL  300
KYGDQLRLGT FDLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-191066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-191066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-191066157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-191066157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-19966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0149s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2306111e-155CU230611.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017283.10.0PREDICTED: uncharacterized protein LOC105120679
SwissprotF4I2745e-89PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2K1ZE560.0A0A2K1ZE56_POPTR; Uncharacterized protein
STRINGPOPTR_0010s17510.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-89G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]