PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0149s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 501aa MW: 54388.8 Da PI: 7.4517

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0149s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.7	6.8e-40	142	202	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss SapurV1A.0149s0040.1.p 142 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSS 202 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	139	199	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	144	200	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	146	200	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	148	184	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MSDLAIKLFG KTIPLQLNQQ EDVSCAANKY ESSSGTPPGS EDCCDNTTTA TSSHENHRSH 60 KERREQEGNN RETSGEEIAN DKHEVVTSNQ INKDSKGPTS SGIKENPETT TSAERETSSL 120 KSSKNEEQSE TSISQEKTLK KPDKIIPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW 180 TAGGTMRNVP VGAGRRKNKS SSASHYRHLM VSEALRTAQV HAMNGFHNPA LGNNSTVLTF 240 GSDSPLCESV ASVLNLSEKT QNSVRNGYHR PERRIIVSCG GTGGDGDDHS SVSSATASNS 300 SEKGCNGTSR EAVNKDYQSF PPQVPCFPGP PWPYPWNSAM SPPTVCPSGY PVSFYPAPTY 360 WGCAVPSPWN VPPCAYSPSA SLNHGIQSYS PTSPLGKHSR DGNILNPPCL EEPSRDGTKS 420 ETGVFVPKTL RIDDPSEAAK SSIWATLGIT SEKSNSINGG GLFKGFQSEK EDRNYMAGTA 480 SVMQANPAAF SRFLNFHENT *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MSDLAIKLFG KTIPLQLNQQ EDVSCAANKY ESSSGTPPGS EDCCDNTTTA TSSHENHRSH  60
KERREQEGNN RETSGEEIAN DKHEVVTSNQ INKDSKGPTS SGIKENPETT TSAERETSSL  120
KSSKNEEQSE TSISQEKTLK KPDKIIPCPR CNSMDTKFCY YNNYNVNQPR HFCKNCQRYW  180
TAGGTMRNVP VGAGRRKNKS SSASHYRHLM VSEALRTAQV HAMNGFHNPA LGNNSTVLTF  240
GSDSPLCESV ASVLNLSEKT QNSVRNGYHR PERRIIVSCG GTGGDGDDHS SVSSATASNS  300
SEKGCNGTSR EAVNKDYQSF PPQVPCFPGP PWPYPWNSAM SPPTVCPSGY PVSFYPAPTY  360
WGCAVPSPWN VPPCAYSPSA SLNHGIQSYS PTSPLGKHSR DGNILNPPCL EEPSRDGTKS  420
ETGVFVPKTL RIDDPSEAAK SSIWATLGIT SEKSNSINGG GLFKGFQSEK EDRNYMAGTA  480
SVMQANPAAF SRFLNFHENT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0149s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006379668.2	0.0	cyclic dof factor 2
TrEMBL	A0A2K1ZE60	0.0	A0A2K1ZE60_POPTR; Uncharacterized protein
STRING	POPTR_0008s08740.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-73	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0149s0040.1.p