PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0149s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 353aa    MW: 39242.5 Da    PI: 7.4585
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0149s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.45.7e-211053245
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                            + en+  rq t++kR++gi+KKA+ELS+LCd+++ +++fs+tgk
  SapurV1A.0149s0010.1.p 10 KLENSNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGK 53
                            679***************************************97 PP
2K-box14.81.2e-061451764778
                   K-box  47 slkeLqqLeqqLekslkkiRskKnellleqie 78 
                             sl++L qLe+ L +sl++iRs+K++l ++++ 
  SapurV1A.0149s0010.1.p 145 SLEHLGQLESSLSESLNRIRSHKEHLGKQHLM 176
                             6899********************99777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.605153IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-27160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-25294IPR002100Transcription factor, MADS-box
CDDcd002662.56E-25281No hitNo description
PRINTSPR004042.4E-16323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRVKLKIKK LENSNGRQAT YAKRKHGIMK KANELSILCD IDIILLMFSP TGKPSLCKGA  60
SSIEEVITKF AQLTPQERAK RKLESLEALK KTFKKLDHDV NIPEFLGTSS QTIEDLTSQS  120
RVLQNHLSYV HKRLSFWTNP DKITSLEHLG QLESSLSESL NRIRSHKEHL GKQHLMSLEC  180
HSQFQNAMHV PFRMGAEQQL PLISWVPNND SQHIMLSEDP NLLPHRDAEC SGSTSFGSYS  240
GYFGAGKNSD LSSSGQEIGM NGILDELNGT GLQLAGQYPY LLGSYNLNLL IDTKFQHAAE  300
MKLQKSPEDF HVIGSFEAPK PGYDSTPCGW ASAPGSCAVT MFDDHLYSQQ PH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-13195194MEF2C
5f28_B3e-13195194MEF2C
5f28_C3e-13195194MEF2C
5f28_D3e-13195194MEF2C
6byy_A3e-13191190MEF2 CHIMERA
6byy_B3e-13191190MEF2 CHIMERA
6byy_C3e-13191190MEF2 CHIMERA
6byy_D3e-13191190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0149s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017362.10.0PREDICTED: MADS-box protein CMB1-like isoform X3
SwissprotQ1PFA41e-113AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A3N7GSN30.0A0A3N7GSN3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s08780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.22e-80AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]